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##startTime=Fri Nov 23 12:09:41 2018
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##content=strelka somatic indel calls
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##FILTER=<ID=QSI_ref,Description="Normal sample is not homozygous ref or sindel Q-score < 20, ie calls with NT!=ref or QSI_NT < 20">
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#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NORMAL	TUMOR	Transcript	Strand	cDNA	GeneSymbol	CHANGE_TYPE	AA_Change	Ref Context	Var Context
1	5288645	.	TG	T	.	PASS	IC=1;IHP=3;NT=ref;QSI=77;QSI_NT=77;RC=2;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1	DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50	37:37:37,37:0,0:0,0:35.22:0.00:0.00	40:40:14,14:18,18:9,9:38.66:0.00:0.00		+					AGGTTTGGCTT	
1	17198108	.	CT	C	.	PASS	IC=0;IHP=4;NT=ref;QSI=22;QSI_NT=22;RC=1;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1	DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50	49:49:49,49:0,0:0,0:48.4:0.07:0.00	52:52:43,44:5,7:4,3:47.63:0.00:0.00		+					GACCCCTGAGC	
1	34905582	.	G	GA	.	PASS	IC=3;IHP=3;NT=ref;QSI=43;QSI_NT=43;RC=2;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1	DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50	36:36:35,35:0,0:0,0:36.98:0.77:0.00	30:30:15,15:9,10:5,4:32.39:3.84:0.00		+					TTTCAGAACAC	
1	71240979	.	TG	T	.	PASS	IC=1;IHP=7;NT=ref;QSI=57;QSI_NT=57;RC=2;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1	DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50	36:36:35,35:0,0:0,0:39.46:0.01:0.00	34:34:15,15:11,13:8,7:33.47:0.00:0.00		+					ATTTTTGGCTT	
1	73638531	.	T	TA	.	PASS	IC=5;IHP=4;NT=ref;QSI=65;QSI_NT=65;RC=4;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1	DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50	32:32:32,32:0,0:0,0:32.04:0.14:0.00	28:28:12,12:15,16:2,2:35.15:0.00:0.00		+					AGCCTTAAAAG	
1	83005655	.	TA	T	.	PASS	IC=1;IHP=2;NT=ref;QSI=48;QSI_NT=48;RC=2;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1	DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50	31:31:31,31:0,0:0,0:31.4:0.45:0.00	29:29:16,16:12,12:2,2:31.72:0.00:0.00		+					TAAATTAATGA	
