Package: netgsa
Type: Package
Title: Network-Based Gene Set Analysis
Version: 4.0.6
Date: 2025-07-30
Authors@R: c(
    person("Michael", "Hellstern", email = "mikeh1@uw.edu", role = c("aut","cre")),
    person("Ali", "Shojaie", email = "ashojaie@uw.edu", role = c("aut")),
    person("Jing", "Ma", role = "aut"),
    person("Kun", "Yue", role = "aut"))
Description: Carry out network-based gene set analysis by incorporating external information about interactions among genes, as well as novel interactions learned from data. Implements methods described in Shojaie A, Michailidis G (2010) <doi:10.1093/biomet/asq038>, Shojaie A, Michailidis G (2009) <doi:10.1089/cmb.2008.0081>, and Ma J, Shojaie A, Michailidis G (2016) <doi:10.1093/bioinformatics/btw410>.
Depends: R (>= 3.5.0)
biocViews:
Imports: AnnotationDbi, corpcor, data.table, dplyr, genefilter, graph,
        graphite, glmnet, glassoFast, httr, igraph, magrittr, Matrix,
        msigdbr, org.Hs.eg.db, quadprog, RCy3, reshape2, rlang, Rcpp
        (>= 1.0.2)
Suggests: knitr, MASS, rmarkdown
License: GPL (>= 3)
LinkingTo: Rcpp, RcppEigen
LazyLoad: yes
LazyData: true
VignetteBuilder: knitr
URL: https://github.com/mikehellstern/netgsa
RoxygenNote: 7.1.1
NeedsCompilation: yes
Packaged: 2025-07-30 19:26:35 UTC; mike
Author: Michael Hellstern [aut, cre],
  Ali Shojaie [aut],
  Jing Ma [aut],
  Kun Yue [aut]
Maintainer: Michael Hellstern <mikeh1@uw.edu>
Repository: CRAN
Date/Publication: 2025-07-30 20:50:02 UTC
Built: R 4.4.3; x86_64-w64-mingw32; 2025-12-08 04:48:20 UTC; windows
Archs: x64
