Package: sccore
Title: Core Utilities for Single-Cell RNA-Seq
Version: 1.0.6
Authors@R: c(person("Viktor","Petukhov", email="viktor.petukhov+gh@pm.me", role="aut"), person("Rasmus","Rydbirk", email="rrydbirk@bmb.sdu.dk", role="aut"), person("Peter", "Kharchenko", email = "peter_kharchenko@hms.harvard.edu", role = "aut"), person("Evan","Biederstedt", email="evan.biederstedt@gmail.com", role=c("aut", "cre")))
Description: Core utilities for single-cell RNA-seq data analysis. Contained within are utility functions for working with differential expression (DE) matrices and count matrices, a collection of functions for manipulating and plotting data via 'ggplot2', and functions to work with cell graphs and cell embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP <doi:10.21105/joss.00861>, collapsing vertices of each cluster in the graph, and propagating graph labels.
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: dplyr, ggplot2, ggrepel, graphics, grDevices, igraph, irlba,
        magrittr, Matrix, methods, parallel, pbmcapply, pROC, Rcpp,
        rlang, scales, Seurat, stats, tibble, utils, uwot, withr
Depends: R (>= 3.5.0)
Suggests: ggrastr (>= 0.1.7), jsonlite, rmumps, testthat
RoxygenNote: 7.3.2
LinkingTo: Rcpp, RcppArmadillo, RcppProgress, RcppEigen
NeedsCompilation: yes
URL: https://github.com/kharchenkolab/sccore
BugReports: https://github.com/kharchenkolab/sccore/issues
Author: Viktor Petukhov [aut],
  Rasmus Rydbirk [aut],
  Peter Kharchenko [aut],
  Evan Biederstedt [aut, cre]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Packaged: 2025-04-13 18:47:19 UTC; evanbiederstedt
Repository: CRAN
Date/Publication: 2025-04-13 19:20:02 UTC
Built: R 4.4.3; x86_64-w64-mingw32; 2025-12-08 05:31:20 UTC; windows
Archs: x64
