Last updated on 2024-09-27 07:51:04 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0-1 | 10.17 | 1855.45 | 1865.62 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.0-1 | 7.11 | 1822.84 | 1829.95 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.0-1 | 807.14 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.0-1 | 707.24 | ERROR | |||
| r-devel-windows-x86_64 | 0.0-1 | 13.00 | 0.00 | 13.00 | FAIL | |
| r-patched-linux-x86_64 | 0.0-1 | 12.26 | 1851.79 | 1864.05 | ERROR | |
| r-release-linux-x86_64 | 0.0-1 | 11.65 | 1850.97 | 1862.62 | ERROR | |
| r-release-macos-arm64 | 0.0-1 | 63.00 | NOTE | |||
| r-release-macos-x86_64 | 0.0-1 | 98.00 | NOTE | |||
| r-release-windows-x86_64 | 0.0-1 | 12.00 | 0.00 | 12.00 | FAIL | |
| r-oldrel-macos-arm64 | 0.0-1 | 80.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.0-1 | 116.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.0-1 | 17.00 | 0.00 | 17.00 | FAIL |
Version: 0.0-1
Check: Rd files
Result: NOTE
checkRd: (-1) setCPT.O.Rd:85: Lost braces; missing escapes or markup?
85 | statespace {0,1,2}, which this is *not* checked anywhere. Thus, if
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 0.0-1
Check: examples
Result: ERROR
Running examples in ‘DNAmixturesLite-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: map.genotypes
> ### Title: Maximum posterior genotypes of unknown contributors
> ### Aliases: map.genotypes
>
> ### ** Examples
>
> data(MC18, USCaucasian, SGMplusDyes)
> mix <- DNAmixture(list(MC18), k = 3, K = "K1", C = list(50), database = USCaucasian)
Warning: Some observed peaks are below the given detection threshold and are set to 0
> p <- mixpar(rho = list(30), eta = list(30), xi = list(0.07),
+ phi = list(c(K1 = 0.7, U1 =0.2, U2 = 0.1)))
> ## Inlude the peak height information
> setPeakInfo(mix, p)
> ## Marginally best genotypes for contributor U1
> mpU1 <- map.genotypes(mix, pmin = 0.01, U = 1, type = "seen", markers = "D16S539")
Killed
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
DNAmixturesLite-package 6.881 0.112 10.114
boxplot.DNAmixture 5.896 0.059 7.859
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.0-1
Check: examples
Result: ERROR
Running examples in ‘DNAmixturesLite-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: map.genotypes
> ### Title: Maximum posterior genotypes of unknown contributors
> ### Aliases: map.genotypes
>
> ### ** Examples
>
> data(MC18, USCaucasian, SGMplusDyes)
> mix <- DNAmixture(list(MC18), k = 3, K = "K1", C = list(50), database = USCaucasian)
Warning: Some observed peaks are below the given detection threshold and are set to 0
> p <- mixpar(rho = list(30), eta = list(30), xi = list(0.07),
+ phi = list(c(K1 = 0.7, U1 =0.2, U2 = 0.1)))
> ## Inlude the peak height information
> setPeakInfo(mix, p)
> ## Marginally best genotypes for contributor U1
> mpU1 <- map.genotypes(mix, pmin = 0.01, U = 1, type = "seen", markers = "D16S539")
Killed
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.0-1
Check: examples
Result: ERROR
Running examples in ‘DNAmixturesLite-Ex.R’ failed
The error most likely occurred in:
> ### Name: map.genotypes
> ### Title: Maximum posterior genotypes of unknown contributors
> ### Aliases: map.genotypes
>
> ### ** Examples
>
> data(MC18, USCaucasian, SGMplusDyes)
> mix <- DNAmixture(list(MC18), k = 3, K = "K1", C = list(50), database = USCaucasian)
Warning: Some observed peaks are below the given detection threshold and are set to 0
> p <- mixpar(rho = list(30), eta = list(30), xi = list(0.07),
+ phi = list(c(K1 = 0.7, U1 =0.2, U2 = 0.1)))
> ## Inlude the peak height information
> setPeakInfo(mix, p)
> ## Marginally best genotypes for contributor U1
> mpU1 <- map.genotypes(mix, pmin = 0.01, U = 1, type = "seen", markers = "D16S539")
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.0-1
Check: examples
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
Warning: Some observed peaks are below the given detection threshold and are set to 0
> p <- mixpar(rho = list(30), eta = list(34), xi = list(0.08),
+ phi = list(c(K1 = 0.71, K3 = 0.1, K2 = 0.19)))
> l <- logL(mixHp)
> l(p)
[1] -324.0419
>
>
>
> cleanEx()
> nameEx("map.genotypes")
> ### * map.genotypes
>
> flush(stderr()); flush(stdout())
>
> ### Name: map.genotypes
> ### Title: Maximum posterior genotypes of unknown contributors
> ### Aliases: map.genotypes
>
> ### ** Examples
>
> data(MC18, USCaucasian, SGMplusDyes)
> mix <- DNAmixture(list(MC18), k = 3, K = "K1", C = list(50), database = USCaucasian)
Warning: Some observed peaks are below the given detection threshold and are set to 0
> p <- mixpar(rho = list(30), eta = list(30), xi = list(0.07),
+ phi = list(c(K1 = 0.7, U1 =0.2, U2 = 0.1)))
> ## Inlude the peak height information
> setPeakInfo(mix, p)
> ## Marginally best genotypes for contributor U1
> mpU1 <- map.genotypes(mix, pmin = 0.01, U = 1, type = "seen", markers = "D16S539")
======== End of example output (where/before crash/hang up occured ?) ========
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64