CRAN Package Check Results for Package KinMixLite

Last updated on 2024-10-07 10:49:22 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1.0 12.89 1863.90 1876.79 ERROR
r-devel-linux-x86_64-debian-gcc 2.1.0 9.40 1814.58 1823.98 ERROR
r-devel-linux-x86_64-fedora-clang 2.1.0 908.80 ERROR
r-devel-linux-x86_64-fedora-gcc 2.1.0 1598.39 ERROR
r-devel-windows-x86_64 2.1.0 14.00 0.00 14.00 FAIL
r-patched-linux-x86_64 2.1.0 19.51 1852.01 1871.52 ERROR
r-release-linux-x86_64 2.1.0 11.87 1857.07 1868.94 ERROR
r-release-macos-arm64 2.1.0 57.00 OK
r-release-macos-x86_64 2.1.0 106.00 OK
r-release-windows-x86_64 2.1.0 14.00 0.00 14.00 FAIL
r-oldrel-macos-arm64 2.1.0 63.00 OK
r-oldrel-macos-x86_64 2.1.0 155.00 OK
r-oldrel-windows-x86_64 2.1.0 18.00 0.00 18.00 FAIL

Check Details

Version: 2.1.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: convertIBD.Rd: pedtools logL.UKX.Rd: logL.UK logLX.Rd: logL mixMLX.Rd: mixML pedigreeIBD.Rd: pedtools wlr.Rd: map.genotypes Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 2.1.0
Check: examples
Result: ERROR Running examples in ‘KinMixLite-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: wlr > ### Title: Computes paternity LR using WLR method > ### Aliases: wlr > > ### ** Examples > > data(test2data) > data(NGMDyes) > > # set threshold C > C<-0.001 > > pars<-mixpar(rho=list(2),eta=list(100),xi=list(0.1),phi=list(c(U1=0.9,U2=0.1))) > > mixWLR<-DNAmixture(list(epg),k=2,C=list(C),database=db,dyes=list(NGMDyes)) > setPeakInfo(mixWLR,pars) > sepWLR<-map.genotypes(mixWLR,type="all",pmin=0.0001,U=1) Killed Examples with CPU (user + system) or elapsed time > 5s user system elapsed loop.rpt.IBD 6.783 0.180 9.118 mixMLX 6.647 0.067 7.455 KinMixLite-package 4.353 0.419 7.225 Flavor: r-devel-linux-x86_64-debian-clang

Version: 2.1.0
Check: examples
Result: ERROR Running examples in ‘KinMixLite-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: wlr > ### Title: Computes paternity LR using WLR method > ### Aliases: wlr > > ### ** Examples > > data(test2data) > data(NGMDyes) > > # set threshold C > C<-0.001 > > pars<-mixpar(rho=list(2),eta=list(100),xi=list(0.1),phi=list(c(U1=0.9,U2=0.1))) > > mixWLR<-DNAmixture(list(epg),k=2,C=list(C),database=db,dyes=list(NGMDyes)) > setPeakInfo(mixWLR,pars) > sepWLR<-map.genotypes(mixWLR,type="all",pmin=0.0001,U=1) Killed Examples with CPU (user + system) or elapsed time > 5s user system elapsed loop.rpt.IBD 4.597 0.144 5.948 mixMLX 3.641 0.101 5.223 Flavor: r-devel-linux-x86_64-debian-gcc

Version: 2.1.0
Check: examples
Result: ERROR Running examples in ‘KinMixLite-Ex.R’ failed The error most likely occurred in: > ### Name: wlr > ### Title: Computes paternity LR using WLR method > ### Aliases: wlr > > ### ** Examples > > data(test2data) > data(NGMDyes) > > # set threshold C > C<-0.001 > > pars<-mixpar(rho=list(2),eta=list(100),xi=list(0.1),phi=list(c(U1=0.9,U2=0.1))) > > mixWLR<-DNAmixture(list(epg),k=2,C=list(C),database=db,dyes=list(NGMDyes)) > setPeakInfo(mixWLR,pars) > sepWLR<-map.genotypes(mixWLR,type="all",pmin=0.0001,U=1) Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.1.0
Check: examples
Result: FAIL Check process probably crashed or hung up for 20 minutes ... killed Most likely this happened in the example checks (?), if not, ignore the following last lines of example output: > > ### ** Examples > > data(test2data) > > > > cleanEx() > nameEx("wlr") > ### * wlr > > flush(stderr()); flush(stdout()) > > ### Name: wlr > ### Title: Computes paternity LR using WLR method > ### Aliases: wlr > > ### ** Examples > > data(test2data) > data(NGMDyes) > > # set threshold C > C<-0.001 > > pars<-mixpar(rho=list(2),eta=list(100),xi=list(0.1),phi=list(c(U1=0.9,U2=0.1))) > > mixWLR<-DNAmixture(list(epg),k=2,C=list(C),database=db,dyes=list(NGMDyes)) > setPeakInfo(mixWLR,pars) > sepWLR<-map.genotypes(mixWLR,type="all",pmin=0.0001,U=1) ======== End of example output (where/before crash/hang up occured ?) ======== Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 2.1.0
Check: examples
Result: ERROR Running examples in ‘KinMixLite-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: wlr > ### Title: Computes paternity LR using WLR method > ### Aliases: wlr > > ### ** Examples > > data(test2data) > data(NGMDyes) > > # set threshold C > C<-0.001 > > pars<-mixpar(rho=list(2),eta=list(100),xi=list(0.1),phi=list(c(U1=0.9,U2=0.1))) > > mixWLR<-DNAmixture(list(epg),k=2,C=list(C),database=db,dyes=list(NGMDyes)) > setPeakInfo(mixWLR,pars) > sepWLR<-map.genotypes(mixWLR,type="all",pmin=0.0001,U=1) Killed Flavors: r-patched-linux-x86_64, r-release-linux-x86_64