Last updated on 2024-10-07 10:49:22 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.1.0 | 12.89 | 1863.90 | 1876.79 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.1.0 | 9.40 | 1814.58 | 1823.98 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.1.0 | 908.80 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.1.0 | 1598.39 | ERROR | |||
| r-devel-windows-x86_64 | 2.1.0 | 14.00 | 0.00 | 14.00 | FAIL | |
| r-patched-linux-x86_64 | 2.1.0 | 19.51 | 1852.01 | 1871.52 | ERROR | |
| r-release-linux-x86_64 | 2.1.0 | 11.87 | 1857.07 | 1868.94 | ERROR | |
| r-release-macos-arm64 | 2.1.0 | 57.00 | OK | |||
| r-release-macos-x86_64 | 2.1.0 | 106.00 | OK | |||
| r-release-windows-x86_64 | 2.1.0 | 14.00 | 0.00 | 14.00 | FAIL | |
| r-oldrel-macos-arm64 | 2.1.0 | 63.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.1.0 | 155.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.1.0 | 18.00 | 0.00 | 18.00 | FAIL |
Version: 2.1.0
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
convertIBD.Rd: pedtools
logL.UKX.Rd: logL.UK
logLX.Rd: logL
mixMLX.Rd: mixML
pedigreeIBD.Rd: pedtools
wlr.Rd: map.genotypes
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 2.1.0
Check: examples
Result: ERROR
Running examples in ‘KinMixLite-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: wlr
> ### Title: Computes paternity LR using WLR method
> ### Aliases: wlr
>
> ### ** Examples
>
> data(test2data)
> data(NGMDyes)
>
> # set threshold C
> C<-0.001
>
> pars<-mixpar(rho=list(2),eta=list(100),xi=list(0.1),phi=list(c(U1=0.9,U2=0.1)))
>
> mixWLR<-DNAmixture(list(epg),k=2,C=list(C),database=db,dyes=list(NGMDyes))
> setPeakInfo(mixWLR,pars)
> sepWLR<-map.genotypes(mixWLR,type="all",pmin=0.0001,U=1)
Killed
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
loop.rpt.IBD 6.783 0.180 9.118
mixMLX 6.647 0.067 7.455
KinMixLite-package 4.353 0.419 7.225
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.1.0
Check: examples
Result: ERROR
Running examples in ‘KinMixLite-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: wlr
> ### Title: Computes paternity LR using WLR method
> ### Aliases: wlr
>
> ### ** Examples
>
> data(test2data)
> data(NGMDyes)
>
> # set threshold C
> C<-0.001
>
> pars<-mixpar(rho=list(2),eta=list(100),xi=list(0.1),phi=list(c(U1=0.9,U2=0.1)))
>
> mixWLR<-DNAmixture(list(epg),k=2,C=list(C),database=db,dyes=list(NGMDyes))
> setPeakInfo(mixWLR,pars)
> sepWLR<-map.genotypes(mixWLR,type="all",pmin=0.0001,U=1)
Killed
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
loop.rpt.IBD 4.597 0.144 5.948
mixMLX 3.641 0.101 5.223
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.1.0
Check: examples
Result: ERROR
Running examples in ‘KinMixLite-Ex.R’ failed
The error most likely occurred in:
> ### Name: wlr
> ### Title: Computes paternity LR using WLR method
> ### Aliases: wlr
>
> ### ** Examples
>
> data(test2data)
> data(NGMDyes)
>
> # set threshold C
> C<-0.001
>
> pars<-mixpar(rho=list(2),eta=list(100),xi=list(0.1),phi=list(c(U1=0.9,U2=0.1)))
>
> mixWLR<-DNAmixture(list(epg),k=2,C=list(C),database=db,dyes=list(NGMDyes))
> setPeakInfo(mixWLR,pars)
> sepWLR<-map.genotypes(mixWLR,type="all",pmin=0.0001,U=1)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.1.0
Check: examples
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
>
> ### ** Examples
>
> data(test2data)
>
>
>
> cleanEx()
> nameEx("wlr")
> ### * wlr
>
> flush(stderr()); flush(stdout())
>
> ### Name: wlr
> ### Title: Computes paternity LR using WLR method
> ### Aliases: wlr
>
> ### ** Examples
>
> data(test2data)
> data(NGMDyes)
>
> # set threshold C
> C<-0.001
>
> pars<-mixpar(rho=list(2),eta=list(100),xi=list(0.1),phi=list(c(U1=0.9,U2=0.1)))
>
> mixWLR<-DNAmixture(list(epg),k=2,C=list(C),database=db,dyes=list(NGMDyes))
> setPeakInfo(mixWLR,pars)
> sepWLR<-map.genotypes(mixWLR,type="all",pmin=0.0001,U=1)
======== End of example output (where/before crash/hang up occured ?) ========
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 2.1.0
Check: examples
Result: ERROR
Running examples in ‘KinMixLite-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: wlr
> ### Title: Computes paternity LR using WLR method
> ### Aliases: wlr
>
> ### ** Examples
>
> data(test2data)
> data(NGMDyes)
>
> # set threshold C
> C<-0.001
>
> pars<-mixpar(rho=list(2),eta=list(100),xi=list(0.1),phi=list(c(U1=0.9,U2=0.1)))
>
> mixWLR<-DNAmixture(list(epg),k=2,C=list(C),database=db,dyes=list(NGMDyes))
> setPeakInfo(mixWLR,pars)
> sepWLR<-map.genotypes(mixWLR,type="all",pmin=0.0001,U=1)
Killed
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64