Last updated on 2024-10-06 07:50:26 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.10 | 35.05 | 305.94 | 340.99 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.10 | 24.55 | 201.68 | 226.23 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0.10 | 608.80 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.10 | 492.68 | ERROR | |||
| r-devel-windows-x86_64 | 1.0.10 | 35.00 | 235.00 | 270.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0.10 | 34.96 | 277.85 | 312.81 | ERROR | |
| r-release-linux-x86_64 | 1.0.10 | 33.64 | 288.86 | 322.50 | NOTE | |
| r-release-macos-arm64 | 1.0.10 | 139.00 | NOTE | |||
| r-release-macos-x86_64 | 1.0.10 | 207.00 | NOTE | |||
| r-release-windows-x86_64 | 1.0.10 | 36.00 | 457.00 | 493.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.0.10 | 103.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.10 | 207.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.10 | 46.00 | 328.00 | 374.00 | ERROR |
Version: 1.0.10
Check: Rd files
Result: NOTE
checkRd: (-1) get_ex_data.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_ex_data.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_ex_data.Rd:34-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_ex_data.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tidy_results.Rd:28-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) tidy_results.Rd:30: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 1.0.10
Check: examples
Result: ERROR
Running examples in ‘abmR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: energyVIZ
> ### Title: Creates a plot/table of energySIM() results
> ### Aliases: energyVIZ
>
> ### ** Examples
>
>
> # 1. Define Population and Run energySIM()
>
> pop1 <- as.species(x=-98.7, y=34.7)
>
> EX1=energySIM(replicates=2,days=7,env_rast=ex_raster, search_radius=200,
+ sigma=.1, dest_x=-108.6, dest_y=26.2, mot_x=.9, mot_y=.9,
+ modeled_species=pop1,
+ optimum_lo=.8,optimum_hi=.9,init_energy=100,
+ direction="R",write_results=FALSE,single_rast=TRUE,mortality = TRUE)
Direction=R specified--Raster will be ignored
>
> # 2. Run energyVIZ() on your result
>
> energyVIZ(EX1,title="Visualizing EnergySIM results",type="plot", aspect_ratio=5/3,
+ label=TRUE)
Warning in geom_map(data = world, map = world, aes_string("long", "lat", :
Ignoring unknown aesthetics: x and y
>
> energyVIZ(EX1,type="summary_table")
Error in `dplyr::mutate()`:
ℹ In argument: `stat = as.character(...)`.
Caused by error in `glue_data()`:
! is.environment(.envir) is not TRUE
Backtrace:
▆
1. ├─abmR::energyVIZ(EX1, type = "summary_table")
2. │ └─gtsummary::tbl_summary(data$results[, -c(1, 2, 9)])
3. │ ├─base::structure(...)
4. │ ├─base::append(...)
5. │ └─gtsummary::brdg_summary(...)
6. │ ├─dplyr::left_join(...)
7. │ ├─dplyr:::left_join.data.frame(...)
8. │ │ └─dplyr::auto_copy(x, y, copy = copy)
9. │ │ ├─dplyr::same_src(x, y)
10. │ │ └─dplyr:::same_src.data.frame(x, y)
11. │ │ └─base::is.data.frame(y)
12. │ ├─dplyr::bind_rows(...)
13. │ │ └─rlang::list2(...)
14. │ └─gtsummary::pier_summary_continuous(...)
15. │ ├─... %>% ...
16. │ ├─dplyr::bind_rows(...)
17. │ │ └─rlang::list2(...)
18. │ ├─dplyr::group_map(...)
19. │ └─dplyr:::group_map.data.frame(...)
20. │ └─dplyr:::map2(chunks, group_keys, .f, ...)
21. │ └─base::mapply(.f, .x, .y, MoreArgs = list(...), SIMPLIFY = FALSE)
22. │ └─gtsummary (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
23. │ ├─dplyr::mutate(...)
24. │ └─dplyr:::mutate.data.frame(...)
25. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
26. │ ├─base::withCallingHandlers(...)
27. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
28. │ └─mask$eval_all_mutate(quo)
29. │ └─dplyr (local) eval()
30. ├─dplyr::left_join(...)
31. ├─dplyr:::left_join.data.frame(...)
32. │ └─dplyr::auto_copy(x, y, copy = copy)
33. │ ├─dplyr::same_src(x, y)
34. │ └─dplyr:::same_src.data.frame(x, y)
35. │ └─base::is.data.frame(y)
36. ├─glue::glue(...)
37. │ └─glue::glue_data(...)
38. │ └─base::stopifnot(is.environment(.envir))
39. │ └─base::stop(simpleError(msg, call = if (p <- sys.parent(1L)) sys.call(p)))
40. └─dplyr (local) `<fn>`(`<smplErrr>`)
41. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64
Version: 1.0.10
Check: examples
Result: ERROR
Running examples in ‘abmR-Ex.R’ failed
The error most likely occurred in:
> ### Name: energyVIZ
> ### Title: Creates a plot/table of energySIM() results
> ### Aliases: energyVIZ
>
> ### ** Examples
>
>
> # 1. Define Population and Run energySIM()
>
> pop1 <- as.species(x=-98.7, y=34.7)
>
> EX1=energySIM(replicates=2,days=7,env_rast=ex_raster, search_radius=200,
+ sigma=.1, dest_x=-108.6, dest_y=26.2, mot_x=.9, mot_y=.9,
+ modeled_species=pop1,
+ optimum_lo=.8,optimum_hi=.9,init_energy=100,
+ direction="R",write_results=FALSE,single_rast=TRUE,mortality = TRUE)
Direction=R specified--Raster will be ignored
>
> # 2. Run energyVIZ() on your result
>
> energyVIZ(EX1,title="Visualizing EnergySIM results",type="plot", aspect_ratio=5/3,
+ label=TRUE)
Warning in geom_map(data = world, map = world, aes_string("long", "lat", :
Ignoring unknown aesthetics: x and y
>
> energyVIZ(EX1,type="summary_table")
Error in `dplyr::mutate()`:
ℹ In argument: `stat = as.character(...)`.
Caused by error in `glue_data()`:
! is.environment(.envir) is not TRUE
Backtrace:
▆
1. ├─abmR::energyVIZ(EX1, type = "summary_table")
2. │ └─gtsummary::tbl_summary(data$results[, -c(1, 2, 9)])
3. │ ├─base::structure(...)
4. │ ├─base::append(...)
5. │ └─gtsummary::brdg_summary(...)
6. │ ├─dplyr::left_join(...)
7. │ ├─dplyr:::left_join.data.frame(...)
8. │ │ └─dplyr::auto_copy(x, y, copy = copy)
9. │ │ ├─dplyr::same_src(x, y)
10. │ │ └─dplyr:::same_src.data.frame(x, y)
11. │ │ └─base::is.data.frame(y)
12. │ ├─dplyr::bind_rows(...)
13. │ │ └─rlang::list2(...)
14. │ └─gtsummary::pier_summary_continuous(...)
15. │ ├─... %>% ...
16. │ ├─dplyr::bind_rows(...)
17. │ │ └─rlang::list2(...)
18. │ ├─dplyr::group_map(...)
19. │ └─dplyr:::group_map.data.frame(...)
20. │ └─dplyr:::map2(chunks, group_keys, .f, ...)
21. │ └─base::mapply(.f, .x, .y, MoreArgs = list(...), SIMPLIFY = FALSE)
22. │ └─gtsummary (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
23. │ ├─dplyr::mutate(...)
24. │ └─dplyr:::mutate.data.frame(...)
25. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
26. │ ├─base::withCallingHandlers(...)
27. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
28. │ └─mask$eval_all_mutate(quo)
29. │ └─dplyr (local) eval()
30. ├─dplyr::left_join(...)
31. ├─dplyr:::left_join.data.frame(...)
32. │ └─dplyr::auto_copy(x, y, copy = copy)
33. │ ├─dplyr::same_src(x, y)
34. │ └─dplyr:::same_src.data.frame(x, y)
35. │ └─base::is.data.frame(y)
36. ├─glue::glue(...)
37. │ └─glue::glue_data(...)
38. │ └─base::stopifnot(is.environment(.envir))
39. │ └─base::stop(simpleError(msg, call = if (p <- sys.parent(1L)) sys.call(p)))
40. └─dplyr (local) `<fn>`(`<smplErrr>`)
41. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-oldrel-windows-x86_64