Last updated on 2024-12-22 10:50:16 CET.
| Package | NOTE | OK |
|---|---|---|
| BayesMixSurv | 4 | 9 |
| BSGW | 13 | |
| CFC | 10 | 3 |
| DBR | 1 | 12 |
| EnsembleBase | 10 | 3 |
| EnsembleCV | 3 | 10 |
| EnsemblePCReg | 3 | 10 |
| EnsemblePenReg | 3 | 10 |
| MatchLinReg | 13 | |
| MfUSampler | 13 | |
| RegressionFactory | 10 | 3 |
| SAMUR | 13 | |
| sns | 13 |
Current CRAN status: NOTE: 4, OK: 9
Version: 0.9.1
Check: Rd contents
Result: NOTE
Auto-generated content requiring editing in Rd file 'BayesMixSurv.Rd':
\keyword: ‘~kwd1’
\keyword: ‘~kwd2’
Auto-generated content requiring editing in Rd file 'BayesMixSurv_CrossVal.Rd':
\keyword: ‘~kwd1’
\keyword: ‘~kwd2’
Auto-generated content requiring editing in Rd file 'plot_BayesMixSurv.Rd':
\keyword: ‘~kwd1’
\keyword: ‘~kwd2’
Auto-generated content requiring editing in Rd file 'predict_BayesMixSurv.Rd':
\keyword: ‘~kwd1’
\keyword: ‘~kwd2’
Auto-generated content requiring editing in Rd file 'summary_BayesMixSurv.Rd':
\keyword: ‘~kwd1’
\keyword: ‘~kwd2’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 10, OK: 3
Version: 1.2.0
Check: Rd files
Result: NOTE
checkRd: (-1) cfc.tbasis.Rd:23: Lost braces
23 | Assuming one-dimensional \code{p1} and \code{p2} for clarity, the algorithm calculates cumulative incidence function for cuase 1 using a recursive formula: \code{ci1[n+1] = ci1[n] + dci1[n]}, where \code{dci1[n] = 0.5*(p2[n] + p2[n+1])*(p1[n] - p1[n+1])}. The increment in cumulative incidence function for cause 2 is similarly calculated, \code{dci2[n] = 0.5*(p1[n] + p1[n+1])*(p2[n] - p2[n+1])}. These equations guarantee that \code{dci1[n] + dci2[n] = p1[n]*p2[n] - p1[n+1]*p2[n+1]}. Event-free probability is simply calculated as code{efp[n] = p1[n]*p2[n]}. Taken together, this numerical integration ensures that \code{efp[n+1] - efp[n] + dci1[n] + dci2[n] = 0}.
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: NOTE: 1, OK: 12
Version: 1.4.1
Check: re-building of vignette outputs
Result: NOTE
Error(s) in re-building vignettes:
--- re-building ‘DBR.Rnw’ using Sweave
DBR 1.4.1
Bayesian Discretized Beta Regression for the Analysis of Ratings Data
Warning in cor.test.default(pain$severity, pain$interference, method = "spearman") :
Cannot compute exact p-value with ties
Warning in cor.test.default(pain$age, pain$interference, method = "spearman") :
Cannot compute exact p-value with ties
Warning in ks.test.default(pred_sample, pain$interference) :
p-value will be approximate in the presence of ties
Error: processing vignette 'DBR.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'DBR.tex' failed.
LaTeX errors:
! LaTeX Error: File `breqn.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.18 \usepackage
{atbegshi}% http://ctan.org/pkg/atbegshi^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘DBR.Rnw’
SUMMARY: processing the following file failed:
‘DBR.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64
Current CRAN status: NOTE: 10, OK: 3
Version: 1.0.2
Check: Rd files
Result: NOTE
checkRd: (-1) ALL.Regression.Config-class.Rd:39: Lost braces
39 | \item{code{shrinkage}:}{Object of class \code{"numeric"}, defining the shrinkage parameter applied to each tree in expansion.}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 1.0.2
Check: Rd contents
Result: NOTE
Auto-generated content requiring editing in Rd file 'validate-methods.Rd':
\keyword: ‘~~ other possible keyword(s) ~~’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Current CRAN status: NOTE: 3, OK: 10
Version: 0.8
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
Regression.Select.MinAvgErr.Config-class.Rd: Instance.List-class,
Regression.Select.Config-class
Regression.Select.MinAvgErr.FitObj-class.Rd:
Regression.Select.Config-class, RegressionSelectPred-class,
Regression.Select.FitObj-class
ecv.regression.Rd: Instance.List-class,
Regression.CV.Batch.FitObj-class, Regression.Batch.FitObj-class
ecv.regression.baselearner.control.Rd: rmse.error
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: NOTE: 3, OK: 10
Version: 1.1.4
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
Regression.Integrator.PCR.SelMin.Config-class.Rd:
Regression.Integrator.Config-class
Regression.Integrator.PCR.SelMin.FitObj-class.Rd:
Regression.Integrator.FitObj-class
epcreg.Rd: Instance.List-class, Regression.CV.Batch.FitObj-class,
Regression.Batch.FitObj-class
epcreg.baselearner.control.Rd: rmse.error
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: NOTE: 3, OK: 10
Version: 0.7
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
Regression.Integrator.PenReg.SelMin.Config-class.Rd:
Regression.Integrator.Config-class
Regression.Integrator.PenReg.SelMin.FitObj-class.Rd:
Regression.Integrator.FitObj-class
epenreg.Rd: Instance.List-class, Regression.CV.Batch.FitObj-class,
Regression.Batch.FitObj-class
epenreg.baselearner.control.Rd: rmse.error
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 10, OK: 3
Version: 0.7.4
Check: Rd files
Result: NOTE
checkRd: (-1) fbase1.binomial.Rd:32: Lost braces; missing escapes or markup?
32 | In all base log-likelihood functions, we have dropped any additive terms that are independent of the distribution parameter, e.g. constant terms or those terms that are dependent on the response variable only. This is done for computational efficiency. Therefore, these functions cannot be used to obtain the absolute values of log-likelihood functions but only in the context of optimization and/or sampling. Users can write thin wrappers around these functions to add the constant terms to the function value. (Derivatives do not need correction. For binomial family, all factorial terms are ignored since they only depend on \code{n} and {y}.)
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13