CRAN Package Check Results for Package conos

Last updated on 2024-06-25 07:06:17 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.5.2 242.50 296.41 538.91 NOTE
r-devel-linux-x86_64-debian-gcc 1.5.2 172.16 187.89 360.05 NOTE
r-devel-windows-x86_64 1.5.2 189.00 211.00 400.00 NOTE
r-patched-linux-x86_64 1.5.2 153.94 243.94 397.88 NOTE
r-release-linux-x86_64 1.5.2 154.82 247.84 402.66 NOTE
r-release-macos-arm64 1.5.2 150.00 NOTE
r-release-macos-x86_64 1.5.2 175.00 NOTE
r-release-windows-x86_64 1.5.2 189.00 207.00 396.00 NOTE
r-oldrel-macos-arm64 1.5.2 148.00 ERROR
r-oldrel-macos-x86_64 1.5.2 297.00 NOTE
r-oldrel-windows-x86_64 1.5.2 243.00 267.00 510.00 NOTE

Check Details

Version: 1.5.2
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'conosPanel', 'p2data' Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-windows-x86_64

Version: 1.5.2
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'conosPanel', 'org.Mm.eg.db', 'p2data' Flavor: r-release-macos-arm64

Version: 1.5.2
Check: installed package size
Result: NOTE installed size is 11.2Mb sub-directories of 1Mb or more: libs 9.4Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.5.2
Check: examples
Result: ERROR Running examples in ‘conos-Ex.R’ failed The error most likely occurred in: > ### Name: Conos > ### Title: Conos R6 class > ### Aliases: Conos > > ### ** Examples > > > ## ------------------------------------------------ > ## Method `Conos$new` > ## ------------------------------------------------ > > con <- Conos$new(small_panel.preprocessed, n.cores=1) > > > ## ------------------------------------------------ > ## Method `Conos$buildGraph` > ## ------------------------------------------------ > > con <- Conos$new(small_panel.preprocessed, n.cores=1) > con$buildGraph(k=10, k.self=5, space='PCA', ncomps=10, n.odgenes=20, matching.method='mNN', + metric='angular', score.component.variance=TRUE, verbose=TRUE) found 0 out of 1 cached PCA space pairs ... running 1 additional PCA space pairs Error in irlba::irlba(x, nv = ncomps, nu = 0, center = cm, right_only = FALSE, : function 'as_cholmod_sparse' not provided by package 'Matrix' Calls: <Anonymous> ... FUN -> quickPlainPCA -> lapply -> FUN -> <Anonymous> Execution halted Flavor: r-oldrel-macos-arm64

Version: 1.5.2
Check: tests
Result: ERROR Running ‘testthat.R’ [3s/3s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 1. ├─base::suppressWarnings(con$buildGraph(ncomps = 25)) at test_functions.R:15:1 2. │ └─base::withCallingHandlers(...) 3. └─con$buildGraph(ncomps = 25) 4. └─private$updatePairs(...) 5. └─sccore::plapply(...) 6. └─base::lapply(...) 7. └─conos (local) FUN(X[[i]], ...) 8. └─conos:::quickPlainPCA(...) 9. └─base::lapply(...) 10. └─conos (local) FUN(X[[i]], ...) 11. └─irlba::irlba(...) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ] Error: Test failures Execution halted Flavor: r-oldrel-macos-arm64

Version: 1.5.2
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'conosPanel', 'org.Mm.eg.db', 'p2data', 'rhdf5' Flavor: r-oldrel-macos-x86_64