Last updated on 2024-12-21 16:48:24 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.2 | 6.17 | 74.48 | 80.65 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.2 | 4.03 | 56.17 | 60.20 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.2 | 136.95 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.2 | 144.52 | OK | |||
| r-devel-windows-x86_64 | 1.0.2 | 8.00 | 75.00 | 83.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0.2 | 5.61 | 70.83 | 76.44 | OK | |
| r-release-linux-x86_64 | 1.0.2 | 5.02 | 71.02 | 76.04 | OK | |
| r-release-macos-arm64 | 1.0.2 | 48.00 | OK | |||
| r-release-macos-x86_64 | 1.0.2 | 81.00 | OK | |||
| r-release-windows-x86_64 | 1.0.2 | 10.00 | 90.00 | 100.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.2 | 46.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.2 | 79.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.2 | 9.00 | 81.00 | 90.00 | ERROR |
Version: 1.0.2
Check: examples
Result: ERROR
Running examples in 'eudract-Ex.R' failed
The error most likely occurred in:
> ### Name: clintrials_gov_convert
> ### Title: applies a conversion using xslt from a simple xml file to a
> ### ClinicalTrials.gov compatible file, and checks against the schema
> ### Aliases: clintrials_gov_convert
>
> ### ** Examples
>
> safety_statistics <- safety_summary(safety,
+ exposed=c("Experimental"=60,"Control"=67))
> simple <- tempfile(fileext = ".xml")
> eudract <- tempfile(fileext = ".xml")
> ct <- tempfile(fileext = ".xml")
> simple_safety_xml(safety_statistics, simple)
'D:\temp\2024_12_18_01_50_01_11818\RtmpcTQwno\file298f07d917642.xml' is created or modified
> eudract_convert(input=simple,
+ output=eudract)
'D:\temp\2024_12_18_01_50_01_11818\RtmpcTQwno\file298f04c241d0.xml' is created or modified
Please email cuh.cctu@nhs.net to tell us if you have successfully uploaded a study to EudraCT.
This is to allow us to measure the impact of this tool.
> clintrials_gov_convert(input=simple,
+ original=system.file("extdata", "1234.xml", package ="eudract"),
+ output=ct)
'D:\temp\2024_12_18_01_50_01_11818\RtmpcTQwno\file298f015416e41.xml' is created or modified
Flavor: r-devel-windows-x86_64
Version: 1.0.2
Check: tests
Result: ERROR
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(eudract)
>
> test_check("eudract")
Flavor: r-devel-windows-x86_64
Version: 1.0.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'eudract.Rmd' using rmarkdown
--- re-building 'standard_reporting.Rmd' using rmarkdown
--- finished re-building 'standard_reporting.Rmd'
SUMMARY: processing the following file failed:
'eudract.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.0.2
Check: examples
Result: ERROR
Running examples in 'eudract-Ex.R' failed
The error most likely occurred in:
> ### Name: clintrials_gov_upload
> ### Title: applies a conversion using xslt from a simple xml file to a
> ### ClinicalTrials.gov compatible file, merges into a study record from
> ### the portal, and uploads the result.
> ### Aliases: clintrials_gov_upload
>
> ### ** Examples
>
> safety_statistics <- safety_summary(safety,
+ exposed=c("Experimental"=60,"Control"=67))
> simple <- tempfile(fileext = ".xml")
> eudract <- tempfile(fileext = ".xml")
> ct <- tempfile(fileext = ".xml")
> simple_safety_xml(safety_statistics, simple)
'D:\temp\2024_12_20_01_50_00_19051\RtmpkvEq8N\file27fb8c22454.xml' is created or modified
> eudract_convert(input=simple,
+ output=eudract)
'D:\temp\2024_12_20_01_50_00_19051\RtmpkvEq8N\file27fb83b7f1266.xml' is created or modified
Please email cuh.cctu@nhs.net to tell us if you have successfully uploaded a study to EudraCT.
This is to allow us to measure the impact of this tool.
> clintrials_gov_convert(input=simple,
+ original=system.file("extdata", "1234.xml", package ="eudract"),
+ output=ct)
'D:\temp\2024_12_20_01_50_00_19051\RtmpkvEq8N\file27fb8456e3e50.xml' is created or modified
Please email cuh.cctu@nhs.net to tell us if you have successfully uploaded a study to ClinicalTrials.gov .
This is to allow us to measure the impact of this tool.
> ## Not run:
> ##D # This needs a real user account to work
> ##D clintrials_gov_upload(
> ##D input=simple,
> ##D orgname="CTU",
> ##D username="Student",
> ##D password="Guinness",
> ##D studyid="1234"
> ##D )
> ##D
> ## End(Not run)
>
>
>
> cleanEx()
Flavor: r-oldrel-windows-x86_64
Version: 1.0.2
Check: tests
Result: ERROR
Running 'testthat.R' [3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(eudract)
>
> test_check("eudract")
Flavor: r-oldrel-windows-x86_64