Last updated on 2025-01-27 03:49:31 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 36.71 | 317.21 | 353.92 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 23.90 | 213.09 | 236.99 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | ERROR | ||||
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 571.39 | NOTE | |||
| r-devel-windows-x86_64 | 1.0.1 | 33.00 | 290.00 | 323.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0.1 | 31.59 | 293.60 | 325.19 | OK | |
| r-release-linux-x86_64 | 1.0.1 | 27.61 | 305.33 | 332.94 | OK | |
| r-release-macos-arm64 | 1.0.1 | 146.00 | OK | |||
| r-release-macos-x86_64 | 1.0.1 | 245.00 | OK | |||
| r-release-windows-x86_64 | 1.0.1 | 35.00 | 278.00 | 313.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.1 | 153.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.1 | 428.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.1 | 44.00 | 388.00 | 432.00 | OK |
Version: 1.0.1
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘GaussianMixtureCalls.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 1.0.1
Check: examples
Result: ERROR
Running examples in ‘karyotapR-Ex.R’ failed
The error most likely occurred in:
> ### Name: runClustering
> ### Title: Cluster 2D data
> ### Aliases: runClustering
>
> ### ** Examples
>
> tap.object <- newTapestriExperimentExample() # example TapestriExperiment object
ℹ Moving gRNA probe to `altExp` slot "grnaCounts".
ℹ Moving barcode probe to `altExp` slot "barcodeCounts".
ℹ Moving chrY probe(s) probe_231, probe_232, probe_233, probe_234, probe_235, probe_236, probe_237, probe_238, probe_239, and probe_240 to `altExp` slot "chrYCounts".
> tap.object <- runPCA(tap.object, alt.exp = "alleleFrequency")
> tap.object <- runUMAP(tap.object, pca.dims = 1:3)
ℹ Running UMAP on: alleleFrequency.
> tap.object <- runClustering(tap.object, dim.reduction = "UMAP", eps = 0.8)
ℹ Finding clusters in: alleleFrequency UMAP
Error in loadNamespace(x) : there is no package called ‘dbscan’
Calls: runClustering ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang