CRAN Package Check Results for Maintainer Martin R. Smith <martin.smith at durham.ac.uk>

CRAN Package Check Results for Maintainer ‘Martin R. Smith <martin.smith at durham.ac.uk>’

Last updated on 2024-12-22 10:50:27 CET.

Package	ERROR	NOTE	OK
CongreveLamsdell2016			13
PlotTools			13
Quartet			13
Rogue	1		12
TBRDist		13
Ternary		6	7
TotalCopheneticIndex			13
TreeDist		8	5
TreeSearch	1	8	4
TreeTools		4	9

Package Quartet

Current CRAN status: OK: 13

Package Rogue

Current CRAN status: ERROR: 1, OK: 12

Version: 2.1.6
Check: package dependencies
Result: ERROR Package required but not available: ‘Rfast’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-devel-linux-x86_64-debian-gcc

Package TBRDist

Current CRAN status: NOTE: 13

Version: 1.0.2
Check: C++ specification
Result: NOTE Specified C++11: please drop specification unless essential Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.0.2
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.0.2
Check: installed package size
Result: NOTE installed size is 5.3Mb sub-directories of 1Mb or more: libs 5.1Mb Flavor: r-oldrel-macos-arm64

Package Ternary

Current CRAN status: NOTE: 6, OK: 7

Version: 2.3.3
Check: installed package size
Result: NOTE installed size is 6.9Mb sub-directories of 1Mb or more: doc 5.9Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package TotalCopheneticIndex

Current CRAN status: OK: 13

Package TreeDist

Current CRAN status: NOTE: 8, OK: 5

Version: 2.9.1
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘TreeDistData’ Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 2.9.1
Check: installed package size
Result: NOTE installed size is 5.2Mb sub-directories of 1Mb or more: doc 1.1Mb libs 3.4Mb Flavors: r-release-macos-arm64, r-oldrel-macos-arm64

Package TreeSearch

Current CRAN status: ERROR: 1, NOTE: 8, OK: 4

Version: 1.5.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: AdditionTree.Rd: ImposeConstraint AllSPR.Rd: phylo CharacterLength.Rd: phylo ConcordantInformation.Rd: phylo Consistency.Rd: phylo DoubleNNI.Rd: phylo JackLabels.Rd: phylo Jackknife.Rd: phylo MaximizeParsimony.Rd: phylo, ImposeConstraint MorphyTreeLength.Rd: RenumberTips, phylo NNI.Rd: phylo PlotCharacter.Rd: phylo Ratchet.Rd: phylo RearrangeEdges.Rd: phylo SPR.Rd: phylo SiteConcordance.Rd: phylo StopUnlessBifurcating.Rd: phylo SuccessiveApproximations.Rd: phylo TBR.Rd: phylo TBRWarning.Rd: phylo TaxonInfluence.Rd: ClusteringInfoDistance, write.nexus, path_sanitize TreeSearch.Rd: phylo cSPR.Rd: phylo dot-NonDuplicateRoot.Rd: phylo inapplicable.datasets.Rd: read.nexus.data Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-windows-x86_64

Version: 1.5.1
Check: package dependencies
Result: ERROR Package required but not available: ‘Rogue’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.5.1
Check: installed package size
Result: NOTE installed size is 5.9Mb sub-directories of 1Mb or more: datasets 1.6Mb doc 1.3Mb libs 1.4Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package TreeTools

Current CRAN status: NOTE: 4, OK: 9

Version: 1.12.0
Check: installed package size
Result: NOTE installed size is 6.1Mb sub-directories of 1Mb or more: R 1.1Mb libs 3.9Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64