Last updated on 2023-12-01 08:51:56 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.6 | 50.33 | 217.87 | 268.20 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.3.6 | 36.78 | 159.11 | 195.89 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.3.6 | 334.08 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.3.6 | 333.87 | NOTE | |||
| r-devel-windows-x86_64 | 0.3.6 | 41.00 | 224.00 | 265.00 | NOTE | |
| r-patched-linux-x86_64 | 0.3.6 | 43.54 | 202.27 | 245.81 | OK | |
| r-release-linux-x86_64 | 0.3.6 | 35.19 | 205.14 | 240.33 | OK | |
| r-release-macos-arm64 | 0.3.6 | 83.00 | ERROR | |||
| r-release-macos-x86_64 | 0.3.6 | 164.00 | ERROR | |||
| r-release-windows-x86_64 | 0.3.6 | 58.00 | 276.00 | 334.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.6 | 93.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.3.6 | 107.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.3.6 | 55.00 | 227.00 | 282.00 | OK |
Version: 0.3.6
Check: Rd files
Result: NOTE
checkRd: (-1) get_sort_var.Rd:14: Lost braces
14 | * `"{{index}}"` : This means to use the index of rows/items
| ^
checkRd: (-1) get_sort_var.Rd:15: Lost braces
15 | * `"{{name}}"` : This means to use row/item names.
| ^
checkRd: (-1) get_sort_var.Rd:16: Lost braces
16 | * `"{{value}}"` : This means to use the values in vectors or lists. Lists}
| ^
checkRd: (-1) lookup_tax_data.Rd:57: Lost braces
57 | * `"{{index}}"` : This means to use the index of rows/items
| ^
checkRd: (-1) lookup_tax_data.Rd:58: Lost braces
58 | * `"{{name}}"` : This means to use row/item names.
| ^
checkRd: (-1) lookup_tax_data.Rd:59: Lost braces
59 | * `"{{value}}"` : This means to use the values in vectors or lists. Lists
| ^
checkRd: (-1) parse_tax_data.Rd:82: Lost braces
82 | following: * For tables, the names of columns can be used. * `"{{index}}"` : This means to use
| ^
checkRd: (-1) parse_tax_data.Rd:83: Lost braces
83 | the index of rows/items * `"{{name}}"` : This means to use row/item names. * `"{{value}}"` :
| ^
checkRd: (-1) parse_tax_data.Rd:83: Lost braces
83 | the index of rows/items * `"{{name}}"` : This means to use row/item names. * `"{{value}}"` :
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.3.6
Check: Rd metadata
Result: NOTE
Invalid package aliases in Rd file 'taxa-package.Rd':
‘taxa-package’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.3.6
Check: Rd \usage sections
Result: NOTE
Documented arguments not in \usage in Rd file 'limited_print.Rd':
‘trunc’
Documented arguments not in \usage in Rd file 'parse_heirarchies_to_taxonomy.Rd':
‘A’
Documented arguments not in \usage in Rd file 'parse_raw_heirarchies_to_taxonomy.Rd':
‘A’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.3.6
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘R6’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.3.6
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'phyloseq', 'biomformat'
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Version: 0.3.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [13s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (3)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test--parsers_and_writers.R:202:3'): Converting to phyloseq ─────────
<packageNotFoundError/error/condition>
Error in `library(phyloseq)`: there is no package called 'phyloseq'
Backtrace:
▆
1. └─base::library(phyloseq) at test--parsers_and_writers.R:202:2
[ FAIL 1 | WARN 1 | SKIP 3 | PASS 535 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-arm64
Version: 0.3.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [22s/32s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (3)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test--parsers_and_writers.R:202:3'): Converting to phyloseq ─────────
<packageNotFoundError/error/condition>
Error in `library(phyloseq)`: there is no package called 'phyloseq'
Backtrace:
▆
1. └─base::library(phyloseq) at test--parsers_and_writers.R:202:2
[ FAIL 1 | WARN 1 | SKIP 3 | PASS 535 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64