Last updated on 2026-01-01 20:48:39 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 38.84 | 808.84 | 847.68 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 25.65 | 548.31 | 573.96 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 65.00 | 1323.65 | 1388.65 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 64.00 | 1321.51 | 1385.51 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 38.00 | 583.00 | 621.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 54.11 | 745.73 | 799.84 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 37.46 | 743.79 | 781.25 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 37.00 | 540.00 | 577.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 130.00 | 138.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 25.00 | 658.00 | 683.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 52.00 | 688.00 | 740.00 | ERROR |
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [336s/165s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_isomap.R: 2026-01-01 17:23:41.482935: Isomap START
> test_pipeop_isomap.R: 2026-01-01 17:23:41.483626: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 17:23:41.492517: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 17:23:41.507119: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 17:23:41.548723: Isomap START
> test_pipeop_isomap.R: 2026-01-01 17:23:41.549165: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 17:23:41.556087: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 17:23:41.570462: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 17:23:41.595201: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 17:23:41.595822: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 17:23:41.621595: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 17:23:41.654183: embedding
> test_pipeop_isomap.R: 2026-01-01 17:23:41.65525: DONE
> test_pipeop_isomap.R: 2026-01-01 17:23:41.692506: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 17:23:41.693094: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 17:23:41.708063: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 17:23:41.741528: embedding
> test_pipeop_isomap.R: 2026-01-01 17:23:41.742786: DONE
> test_pipeop_isomap.R: 2026-01-01 17:23:41.820421: Isomap START
> test_pipeop_isomap.R: 2026-01-01 17:23:41.820899: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 17:23:41.834366: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 17:23:41.912941: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 17:23:41.957031: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 17:23:41.957608: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 17:23:41.979739: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 17:23:42.152751: embedding
> test_pipeop_isomap.R: 2026-01-01 17:23:42.155404: DONE
> test_pipeop_isomap.R: 2026-01-01 17:23:42.354391: Isomap START
> test_pipeop_isomap.R: 2026-01-01 17:23:42.354786: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 17:23:42.360853: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 17:23:42.374822: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 17:23:42.398688: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 17:23:42.399251: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 17:23:42.410692: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 17:23:42.447361: embedding
> test_pipeop_isomap.R: 2026-01-01 17:23:42.448451: DONE
> test_pipeop_isomap.R: 2026-01-01 17:23:42.561541: Isomap START
> test_pipeop_isomap.R: 2026-01-01 17:23:42.561973: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 17:23:42.568465: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 17:23:42.582738: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 17:23:42.623627: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 17:23:42.624274: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 17:23:42.650117: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 17:23:42.682517: embedding
> test_pipeop_isomap.R: 2026-01-01 17:23:42.68373: DONE
> test_pipeop_isomap.R: 2026-01-01 17:23:42.747654: Isomap START
> test_pipeop_isomap.R: 2026-01-01 17:23:42.748038: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 17:23:42.753757: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 17:23:42.76983: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 17:23:42.804319: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 17:23:42.804896: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 17:23:42.815519: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 17:23:42.8483: embedding
> test_pipeop_isomap.R: 2026-01-01 17:23:42.849317: DONE
> test_pipeop_isomap.R: 2026-01-01 17:23:42.903651: Isomap START
> test_pipeop_isomap.R: 2026-01-01 17:23:42.904046: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 17:23:42.91: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 17:23:42.924059: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 17:23:42.958081: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 17:23:42.958627: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 17:23:42.979822: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 17:23:43.013864: embedding
> test_pipeop_isomap.R: 2026-01-01 17:23:43.015001: DONE
> test_pipeop_isomap.R: 2026-01-01 17:23:43.083075: Isomap START
> test_pipeop_isomap.R: 2026-01-01 17:23:43.083479: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 17:23:43.089376: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 17:23:43.103367: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 17:23:43.138049: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 17:23:43.138597: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 17:23:43.148858: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 17:23:43.180563: embedding
> test_pipeop_isomap.R: 2026-01-01 17:23:43.181541: DONE
> test_pipeop_isomap.R: 2026-01-01 17:23:43.239643: Isomap START
> test_pipeop_isomap.R: 2026-01-01 17:23:43.240036: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 17:23:43.245286: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 17:23:43.258285: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 17:23:43.334563: Isomap START
> test_pipeop_isomap.R: 2026-01-01 17:23:43.334937: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 17:23:43.340469: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 17:23:43.353925: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 17:23:43.371598: Isomap START
> test_pipeop_isomap.R: 2026-01-01 17:23:43.371971: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 17:23:43.379517: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 17:23:43.405394: Classical Scaling
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
══ Skipped tests (100) ═════════════════════════════════════════════════════════
• On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_datefeatures.R:10:3', 'test_pipeop_encodeimpact.R:11:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',
'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3',
'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_spatialsign.R:6:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafoscalerange.R:5:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.5383139')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [106s/52s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-02 05:43:06.105956: Isomap START
> test_pipeop_isomap.R: 2026-01-02 05:43:06.106215: constructing knn graph
> test_pipeop_isomap.R: 2026-01-02 05:43:06.109177: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-02 05:43:06.115284: Classical Scaling
> test_pipeop_isomap.R: 2026-01-02 05:43:06.127269: Isomap START
> test_pipeop_isomap.R: 2026-01-02 05:43:06.127417: constructing knn graph
> test_pipeop_isomap.R: 2026-01-02 05:43:06.129795: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-02 05:43:06.135888: Classical Scaling
> test_pipeop_isomap.R: 2026-01-02 05:43:06.142818: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-02 05:43:06.142976: constructing knn graph
> test_pipeop_isomap.R: 2026-01-02 05:43:06.35064: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-02 05:43:06.365921: embedding
> test_pipeop_isomap.R: 2026-01-02 05:43:06.366285: DONE
> test_pipeop_isomap.R: 2026-01-02 05:43:06.372426: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-02 05:43:06.37255: constructing knn graph
> test_pipeop_isomap.R: 2026-01-02 05:43:06.377044: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-02 05:43:06.391693: embedding
> test_pipeop_isomap.R: 2026-01-02 05:43:06.392047: DONE
> test_pipeop_isomap.R: 2026-01-02 05:43:06.411288: Isomap START
> test_pipeop_isomap.R: 2026-01-02 05:43:06.411424: constructing knn graph
> test_pipeop_isomap.R: 2026-01-02 05:43:06.415873: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-02 05:43:06.449436: Classical Scaling
> test_pipeop_isomap.R: 2026-01-02 05:43:06.457654: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-02 05:43:06.457811: constructing knn graph
> test_pipeop_isomap.R: 2026-01-02 05:43:06.466229: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-02 05:43:06.544065: embedding
> test_pipeop_isomap.R: 2026-01-02 05:43:06.545265: DONE
> test_pipeop_isomap.R: 2026-01-02 05:43:06.583994: Isomap START
> test_pipeop_isomap.R: 2026-01-02 05:43:06.584141: constructing knn graph
> test_pipeop_isomap.R: 2026-01-02 05:43:06.586472: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-02 05:43:06.592583: Classical Scaling
> test_pipeop_isomap.R: 2026-01-02 05:43:06.599873: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-02 05:43:06.600045: constructing knn graph
> test_pipeop_isomap.R: 2026-01-02 05:43:06.604594: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-02 05:43:06.619539: embedding
> test_pipeop_isomap.R: 2026-01-02 05:43:06.619927: DONE
> test_pipeop_isomap.R: 2026-01-02 05:43:06.652544: Isomap START
> test_pipeop_isomap.R: 2026-01-02 05:43:06.65269: constructing knn graph
> test_pipeop_isomap.R: 2026-01-02 05:43:06.655157: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-02 05:43:06.661267: Classical Scaling
> test_pipeop_isomap.R: 2026-01-02 05:43:06.67428: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-02 05:43:06.674488: constructing knn graph
> test_pipeop_isomap.R: 2026-01-02 05:43:06.679149: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-02 05:43:06.693958: embedding
> test_pipeop_isomap.R: 2026-01-02 05:43:06.694326: DONE
> test_pipeop_isomap.R: 2026-01-02 05:43:06.712889: Isomap START
> test_pipeop_isomap.R: 2026-01-02 05:43:06.71304: constructing knn graph
> test_pipeop_isomap.R: 2026-01-02 05:43:06.715513: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-02 05:43:06.721895: Classical Scaling
> test_pipeop_isomap.R: 2026-01-02 05:43:06.74038: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-02 05:43:06.740589: constructing knn graph
> test_pipeop_isomap.R: 2026-01-02 05:43:06.745142: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-02 05:43:06.760373: embedding
> test_pipeop_isomap.R: 2026-01-02 05:43:06.760826: DONE
> test_pipeop_isomap.R: 2026-01-02 05:43:06.779219: Isomap START
> test_pipeop_isomap.R: 2026-01-02 05:43:06.779363: constructing knn graph
> test_pipeop_isomap.R: 2026-01-02 05:43:06.7816: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-02 05:43:06.787337: Classical Scaling
> test_pipeop_isomap.R: 2026-01-02 05:43:06.798935: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-02 05:43:06.799113: constructing knn graph
> test_pipeop_isomap.R: 2026-01-02 05:43:06.804143: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-02 05:43:06.819137: embedding
> test_pipeop_isomap.R: 2026-01-02 05:43:06.819522: DONE
> test_pipeop_isomap.R: 2026-01-02 05:43:06.838074: Isomap START
> test_pipeop_isomap.R: 2026-01-02 05:43:06.838228: constructing knn graph
> test_pipeop_isomap.R: 2026-01-02 05:43:06.840651: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-02 05:43:06.846786: Classical Scaling
> test_pipeop_isomap.R: 2026-01-02 05:43:06.858578: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-02 05:43:06.858785: constructing knn graph
> test_pipeop_isomap.R: 2026-01-02 05:43:06.863825: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-02 05:43:06.878506: embedding
> test_pipeop_isomap.R: 2026-01-02 05:43:06.878898: DONE
> test_pipeop_isomap.R: 2026-01-02 05:43:06.90395: Isomap START
> test_pipeop_isomap.R: 2026-01-02 05:43:06.904077: constructing knn graph
> test_pipeop_isomap.R: 2026-01-02 05:43:06.9064: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-02 05:43:06.912445: Classical Scaling
> test_pipeop_isomap.R: 2026-01-02 05:43:06.931128: Isomap START
> test_pipeop_isomap.R: 2026-01-02 05:43:06.931289: constructing knn graph
> test_pipeop_isomap.R: 2026-01-02 05:43:06.933677: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-02 05:43:06.939826: Classical Scaling
> test_pipeop_isomap.R: 2026-01-02 05:43:06.945668: Isomap START
> test_pipeop_isomap.R: 2026-01-02 05:43:06.945791: constructing knn graph
> test_pipeop_isomap.R: 2026-01-02 05:43:06.948107: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-02 05:43:06.954085: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [327s/333s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-01 10:24:25.599694: Isomap START
> test_pipeop_isomap.R: 2026-01-01 10:24:25.600235: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 10:24:25.609254: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 10:24:25.6272: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 10:24:25.670489: Isomap START
> test_pipeop_isomap.R: 2026-01-01 10:24:25.67078: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 10:24:25.678711: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 10:24:25.704886: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 10:24:25.735526: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 10:24:25.735961: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 10:24:25.751077: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 10:24:25.796848: embedding
> test_pipeop_isomap.R: 2026-01-01 10:24:25.798045: DONE
> test_pipeop_isomap.R: 2026-01-01 10:24:25.823466: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 10:24:25.823777: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 10:24:25.844888: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 10:24:25.904391: embedding
> test_pipeop_isomap.R: 2026-01-01 10:24:25.905403: DONE
> test_pipeop_isomap.R: 2026-01-01 10:24:26.005329: Isomap START
> test_pipeop_isomap.R: 2026-01-01 10:24:26.005614: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 10:24:26.058464: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 10:24:26.216218: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 10:24:26.257831: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 10:24:26.258585: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 10:24:26.306401: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 10:24:26.591533: embedding
> test_pipeop_isomap.R: 2026-01-01 10:24:26.611253: DONE
> test_pipeop_isomap.R: 2026-01-01 10:24:26.800828: Isomap START
> test_pipeop_isomap.R: 2026-01-01 10:24:26.801147: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 10:24:26.808066: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 10:24:26.846006: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 10:24:26.875808: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 10:24:26.876211: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 10:24:26.89702: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 10:24:26.948073: embedding
> test_pipeop_isomap.R: 2026-01-01 10:24:26.949176: DONE
> test_pipeop_isomap.R: 2026-01-01 10:24:27.113435: Isomap START
> test_pipeop_isomap.R: 2026-01-01 10:24:27.113814: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 10:24:27.129157: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 10:24:27.152186: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 10:24:27.214434: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 10:24:27.214919: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 10:24:27.230026: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 10:24:27.287227: embedding
> test_pipeop_isomap.R: 2026-01-01 10:24:27.312046: DONE
> test_pipeop_isomap.R: 2026-01-01 10:24:27.40821: Isomap START
> test_pipeop_isomap.R: 2026-01-01 10:24:27.408489: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 10:24:27.41504: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 10:24:27.436666: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 10:24:27.479504: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 10:24:27.479924: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 10:24:27.505805: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 10:24:27.567291: embedding
> test_pipeop_isomap.R: 2026-01-01 10:24:27.56851: DONE
> test_pipeop_isomap.R: 2026-01-01 10:24:27.656699: Isomap START
> test_pipeop_isomap.R: 2026-01-01 10:24:27.657029: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 10:24:27.664347: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 10:24:27.686998: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 10:24:27.737428: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 10:24:27.739124: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 10:24:27.7585: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 10:24:27.833437: embedding
> test_pipeop_isomap.R: 2026-01-01 10:24:27.83459: DONE
> test_pipeop_isomap.R: 2026-01-01 10:24:27.929084: Isomap START
> test_pipeop_isomap.R: 2026-01-01 10:24:27.929381: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 10:24:27.938523: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 10:24:27.961517: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 10:24:28.010955: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-01 10:24:28.012146: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 10:24:28.028818: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 10:24:28.09439: embedding
> test_pipeop_isomap.R: 2026-01-01 10:24:28.09805: DONE
> test_pipeop_isomap.R: 2026-01-01 10:24:28.200244: Isomap START
> test_pipeop_isomap.R: 2026-01-01 10:24:28.200546: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 10:24:28.208495: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 10:24:28.225976: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 10:24:28.342247: Isomap START
> test_pipeop_isomap.R: 2026-01-01 10:24:28.342538: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 10:24:28.350439: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 10:24:28.375822: Classical Scaling
> test_pipeop_isomap.R: 2026-01-01 10:24:28.401959: Isomap START
> test_pipeop_isomap.R: 2026-01-01 10:24:28.402272: constructing knn graph
> test_pipeop_isomap.R: 2026-01-01 10:24:28.409163: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-01 10:24:28.428005: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [298s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-29 23:58:08.39592: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:08.397001: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:08.415444: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:08.432775: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:08.48134: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:08.482003: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:08.493394: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:08.509237: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:08.541266: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:08.541932: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:08.557638: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:08.59562: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:08.597146: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:08.626392: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:08.626867: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:08.642581: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:08.696343: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:08.716096: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:08.84862: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:08.84923: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:08.870996: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:08.986946: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:09.040497: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:09.041379: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:09.080702: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:09.286405: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:09.29159: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:09.523103: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:09.523722: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:09.534337: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:09.557069: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:09.627172: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:09.62803: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:09.650044: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:09.694663: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:09.695734: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:09.91991: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:09.920563: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:09.932632: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:09.954441: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:10.031702: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:10.032621: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:10.055415: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:10.105656: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:10.107462: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:10.232661: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:10.233306: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:10.245937: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:10.273066: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:10.348642: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:10.349526: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:10.388423: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:10.437995: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:10.439157: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:10.560174: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:10.560797: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:10.571369: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:10.593617: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:10.668105: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:10.669004: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:10.687689: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:10.737882: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:10.739425: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:10.829189: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:10.829685: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:10.837691: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:10.858411: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:10.933407: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 23:58:10.934289: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:10.952716: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:10.995014: embedding
> test_pipeop_isomap.R: 2025-12-29 23:58:10.996929: DONE
> test_pipeop_isomap.R: 2025-12-29 23:58:11.142308: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:11.143: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:11.170818: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:11.194719: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:11.315518: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:11.316138: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:11.328614: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:11.351195: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 23:58:11.387378: Isomap START
> test_pipeop_isomap.R: 2025-12-29 23:58:11.38798: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 23:58:11.400866: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 23:58:11.419185: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64