Last updated on 2025-12-07 17:50:20 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 16.09 | 124.35 | 140.44 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 0.27 | 2.50 | 2.77 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | 35.00 | 178.50 | 213.50 | NOTE | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 65.00 | 165.16 | 230.16 | NOTE | |
| r-devel-windows-x86_64 | 1.0.1 | 16.00 | 120.00 | 136.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0.1 | 15.34 | 114.98 | 130.32 | NOTE | |
| r-release-linux-x86_64 | 1.0.1 | 13.31 | 113.15 | 126.46 | NOTE | |
| r-release-macos-arm64 | 1.0.1 | NOTE | ||||
| r-release-macos-x86_64 | 1.0.1 | 10.00 | 94.00 | 104.00 | NOTE | |
| r-release-windows-x86_64 | 1.0.1 | 17.00 | 120.00 | 137.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.0.1 | NOTE | ||||
| r-oldrel-macos-x86_64 | 1.0.1 | 10.00 | 81.00 | 91.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.0.1 | 22.00 | 164.00 | 186.00 | NOTE |
Version: 1.0.1
Check: Rd files
Result: NOTE
checkRd: (-1) LD.heat.map.Rd:5: Lost braces; missing escapes or markup?
5 | \title{Generates heat-maps for four linkage disequilibrium (LD) values ({D'}, {Wn}, {WLoc1/Loc2} and {WLoc2/Loc1}) generated for all pairs of phased and unphased two-locus haplotypes by LDWrap().}
| ^
checkRd: (-1) LD.heat.map.Rd:5: Lost braces; missing escapes or markup?
5 | \title{Generates heat-maps for four linkage disequilibrium (LD) values ({D'}, {Wn}, {WLoc1/Loc2} and {WLoc2/Loc1}) generated for all pairs of phased and unphased two-locus haplotypes by LDWrap().}
| ^
checkRd: (-1) LD.heat.map.Rd:5: Lost braces; missing escapes or markup?
5 | \title{Generates heat-maps for four linkage disequilibrium (LD) values ({D'}, {Wn}, {WLoc1/Loc2} and {WLoc2/Loc1}) generated for all pairs of phased and unphased two-locus haplotypes by LDWrap().}
| ^
checkRd: (-1) LD.heat.map.Rd:5: Lost braces; missing escapes or markup?
5 | \title{Generates heat-maps for four linkage disequilibrium (LD) values ({D'}, {Wn}, {WLoc1/Loc2} and {WLoc2/Loc1}) generated for all pairs of phased and unphased two-locus haplotypes by LDWrap().}
| ^
checkRd: (-1) LD.sign.test.Rd:27: Lost braces; missing escapes or markup?
27 | Applies binom.test() to pairs of {D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and number of haplotypes values in the *_LD_results.csv files generated by LDWrap().
| ^
checkRd: (-1) LD.sign.test.Rd:27: Lost braces; missing escapes or markup?
27 | Applies binom.test() to pairs of {D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and number of haplotypes values in the *_LD_results.csv files generated by LDWrap().
| ^
checkRd: (-1) LD.sign.test.Rd:27: Lost braces; missing escapes or markup?
27 | Applies binom.test() to pairs of {D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and number of haplotypes values in the *_LD_results.csv files generated by LDWrap().
| ^
checkRd: (-1) LD.sign.test.Rd:27: Lost braces; missing escapes or markup?
27 | Applies binom.test() to pairs of {D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and number of haplotypes values in the *_LD_results.csv files generated by LDWrap().
| ^
checkRd: (-1) LD.sign.test.Rd:24: Lost braces; missing escapes or markup?
24 | A data frame of five columns ({D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and N_Haplotypes) and four rows (#unphased > phased, #unphased = phased, #locus pairs and p-values).
| ^
checkRd: (-1) LD.sign.test.Rd:24: Lost braces; missing escapes or markup?
24 | A data frame of five columns ({D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and N_Haplotypes) and four rows (#unphased > phased, #unphased = phased, #locus pairs and p-values).
| ^
checkRd: (-1) LD.sign.test.Rd:24: Lost braces; missing escapes or markup?
24 | A data frame of five columns ({D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and N_Haplotypes) and four rows (#unphased > phased, #unphased = phased, #locus pairs and p-values).
| ^
checkRd: (-1) LD.sign.test.Rd:24: Lost braces; missing escapes or markup?
24 | A data frame of five columns ({D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and N_Haplotypes) and four rows (#unphased > phased, #unphased = phased, #locus pairs and p-values).
| ^
checkRd: (-1) cALD.Rd:33: Lost braces; missing escapes or markup?
33 | A vector of {D'}, {Wn}, {WLocus2/Locus1}, {WLocus1/Locus2} values, and the number of haplotypes evaluated
| ^
checkRd: (-1) cALD.Rd:33: Lost braces; missing escapes or markup?
33 | A vector of {D'}, {Wn}, {WLocus2/Locus1}, {WLocus1/Locus2} values, and the number of haplotypes evaluated
| ^
checkRd: (-1) cALD.Rd:33: Lost braces; missing escapes or markup?
33 | A vector of {D'}, {Wn}, {WLocus2/Locus1}, {WLocus1/Locus2} values, and the number of haplotypes evaluated
| ^
checkRd: (-1) cALD.Rd:33: Lost braces; missing escapes or markup?
33 | A vector of {D'}, {Wn}, {WLocus2/Locus1}, {WLocus1/Locus2} values, and the number of haplotypes evaluated
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.1
Check: package dependencies
Result: ERROR
Packages required but not available: 'haplo.stats', 'gap', 'BIGDAWG'
Packages suggested but not available for checking: 'knitr', 'rmarkdown'
VignetteBuilder package required for checking but not installed: ‘knitr’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc