CRAN Package Check Results for Package relMix

Last updated on 2024-10-08 12:50:30 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.4 13.89 96.90 110.79 ERROR
r-devel-linux-x86_64-debian-gcc 1.4 10.34 76.12 86.46 NOTE
r-devel-linux-x86_64-fedora-clang 1.4 184.74 OK
r-devel-linux-x86_64-fedora-gcc 1.4 182.82 OK
r-devel-windows-x86_64 1.4 16.00 104.00 120.00 NOTE
r-patched-linux-x86_64 1.4 18.41 92.05 110.46 OK
r-release-linux-x86_64 1.4 11.27 92.89 104.16 OK
r-release-macos-arm64 1.4 110.00 OK
r-release-macos-x86_64 1.4 99.00 OK
r-release-windows-x86_64 1.4 16.00 111.00 127.00 OK
r-oldrel-macos-arm64 1.4 73.00 OK
r-oldrel-macos-x86_64 1.4 134.00 OK
r-oldrel-windows-x86_64 1.4 17.00 121.00 138.00 OK

Check Details

Version: 1.4
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: createDatamatrix.Rd: FamiliasLocus relMix.Rd: FamiliasPedigree, FamiliasLocus, Familias, FamiliasPosterior Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 1.4
Check: examples
Result: ERROR Running examples in ‘relMix-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: relMix > ### Title: Relationship inference based on mixtures > ### Aliases: relMix > > ### ** Examples > > #Example 1: paternity trio with mixture of mother and child > #Define alleles and frequencies > alleles <- 1:2 > afreq <- c(0.4,0.6) > #Define pedigrees > persons <- c("CH","MO","AF") > ped1 <- Familias::FamiliasPedigree(id=persons, dadid=c("AF",NA, NA), momid=c("MO", NA,NA), + sex=c("male", "female", "male")) > ped2 <- Familias::FamiliasPedigree(id=c(persons, "TF"), dadid=c("TF", NA, NA,NA), + momid=c("MO", NA, NA,NA), sex=c("male", "female", "male", "male")) > pedigrees <- list(isFather = ped1, unrelated=ped2) > #Create locus object > locus <- Familias::FamiliasLocus(frequencies=afreq,name="M1", + allelenames= alleles) > #Known genotypes of alleged father and mother > gAF <- c(1,1) > gMO <- c(1,1) > #Mixture alleles > R <- c(1,2) > datamatrix <- createDatamatrix(locus,knownGenos=list(AF=gAF,MO=gMO),idsU=c("CH")) > #Define dropout and drop-in values > d <- 0.1 > di <- 0.05 > res <- relMix(pedigrees, locus, R, datamatrix, ids=c("MO","CH"), + D=list(c(0,0),c(d,d^2)),di=di, kinship=0) *** buffer overflow detected ***: terminated Aborted Flavor: r-devel-linux-x86_64-debian-clang