Last updated on 2024-10-06 07:50:42 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.9.1 | 14.52 | 303.58 | 318.10 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.9.1 | 10.05 | 203.99 | 214.04 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.9.1 | 476.91 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.9.1 | 446.71 | OK | |||
| r-devel-windows-x86_64 | 0.9.1 | 40.00 | 590.00 | 630.00 | OK | |
| r-patched-linux-x86_64 | 0.9.1 | 13.89 | 278.97 | 292.86 | OK | |
| r-release-linux-x86_64 | 0.9.1 | 14.61 | 280.95 | 295.56 | ERROR | |
| r-release-macos-arm64 | 0.9.1 | 136.00 | OK | |||
| r-release-macos-x86_64 | 0.9.1 | 228.00 | OK | |||
| r-release-windows-x86_64 | 0.9.1 | 36.00 | 628.00 | 664.00 | OK | |
| r-oldrel-macos-arm64 | 0.9.1 | 146.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.9.1 | 306.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.9.1 | 39.00 | 485.00 | 524.00 | OK |
Version: 0.9.1
Check: installed package size
Result: NOTE
installed size is 5.0Mb
sub-directories of 1Mb or more:
doc 3.7Mb
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.9.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [63s/100s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(slendr)
The 'slim' binary could not be found in your $PATH. Most of
the functionality of slendr will work without any issues but
you will not be able to simulate data with the `slim()` function.
If you want to run SLiM simulations, make sure to modify the $PATH
variable so that it points to the directory containing the slim
command-line program. One easy way to do this is to add this:
PATH="path/to/directory/with/slim/binary"
to your ~/.Renviron file.
Alternatively, use the `slim_path` argument of the `slim()` function.
--------------------
A slendr Python (3.12) environment with the necessary versions of
msprime (1.3.1), tskit (0.5.6), pyslim (1.0.4), and tspop (0.0.2)
has not been found.
You can setup a pre-configured environment with all of slendr's Python
dependencies automatically by running the function `setup_env()`.
>
> test_check("slendr")
[ FAIL 1 | WARN 1 | SKIP 32 | PASS 175 ]
══ Skipped tests (32) ══════════════════════════════════════════════════════════
• !is_slendr_env_present() is TRUE (32): 'test-compilation.R:65:1',
'test-engines.R:1:1', 'test-geneflow.R:50:3', 'test-ibd-squashing.R:1:1',
'test-ibd.R:1:1', 'test-interaction-changes.R:49:3', 'test-manual-ts.R:1:1',
'test-msprime-geneflow.R:5:1', 'test-msprime-metadata.R:1:1',
'test-msprime.R:23:1', 'test-nonserialized.R:1:1', 'test-population.R:43:3',
'test-population.R:60:3', 'test-population.R:142:3',
'test-pure-msprime-vs-slendr.R:4:1', 'test-pure-slim-vs-slendr.R:4:1',
'test-resizes-locked.R:1:1', 'test-resizes.R:1:1', 'test-runners.R:1:1',
'test-sampling.R:70:3', 'test-sampling.R:127:3', 'test-sampling.R:228:3',
'test-sampling.R:254:3', 'test-sampling.R:287:3',
'test-simulation-runs.R:1:1', 'test-time-direction.R:1:1',
'test-trees.R:1:1', 'test-ts-ancestors-descendants.R:1:1',
'test-ts-pure-nonspatial.R:1:1', 'test-ts-pure-spatial.R:1:1',
'test-ts.R:1:1', 'test-tspop.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-naturalearth.R:4:3'): all three variants of the Natural Earth data can be downloaded ──
Error in `utils::download.file(url = sprintf("https://naturalearth.s3.amazonaws.com/%sm_physical/%s",
size, file), destfile = path, quiet = TRUE)`: cannot open URL 'https://naturalearth.s3.amazonaws.com/50m_physical/ne_50m_land.zip'
Backtrace:
▆
1. ├─utils::capture.output(...) at test-naturalearth.R:4:3
2. │ └─base::withVisible(...elt(i))
3. └─slendr::world(...)
4. └─utils::download.file(...)
[ FAIL 1 | WARN 1 | SKIP 32 | PASS 175 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64