Last updated on 2026-04-02 22:51:59 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 3.28 | 46.39 | 49.67 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 2.40 | 40.27 | 42.67 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 71.84 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 81.21 | OK | |||
| r-devel-macos-arm64 | 0.1.0 | 1.00 | 30.00 | 31.00 | OK | |
| r-devel-windows-x86_64 | 0.1.0 | 7.00 | 65.00 | 72.00 | OK | |
| r-patched-linux-x86_64 | 0.1.0 | 3.22 | 42.64 | 45.86 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 3.17 | 40.71 | 43.88 | OK | |
| r-release-macos-arm64 | 0.1.0 | 1.00 | 21.00 | 22.00 | OK | |
| r-release-macos-x86_64 | 0.1.0 | 3.00 | 62.00 | 65.00 | OK | |
| r-release-windows-x86_64 | 0.1.0 | 5.00 | 63.00 | 68.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.0 | 3.00 | 64.00 | 67.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.0 | 7.00 | 77.00 | 84.00 | OK |
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/6s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(taxodist)
>
> test_check("taxodist")
-- Lineage Comparison --
MRCA: Dinosauria at depth 3
Shared lineage (3 nodes):
Biota
Animalia
Dinosauria
Tyrannosaurus only (2 nodes):
> Theropoda
> Tyrannosaurus
Triceratops only (2 nodes):
> Ornithischia
> Triceratops
x Could not retrieve lineage for Fakeosaurus
x Could not retrieve lineage for Fakeosaurus
x Could not retrieve lineage for Fakeosaurus
i Fetching 3 lineages...
v Lineages fetched.
i Using cached ID for Carnotaurus
i Searching Taxonomicon for Drosophila...
! Could not reach Taxonomicon for Drosophila
i Searching Taxonomicon for Drosophila...
! Could not reach Taxonomicon for Drosophila
i Using cached lineage for ID 99999
! Could not retrieve lineage for ID 00000
! Could not retrieve lineage for ID 99999
i Using cached lineage for ID 50841
-- Taxonomic Distance --
* Carnotaurus vs Triceratops
Distance : 0.333333333333333
MRCA : Dinosauria (depth 3)
Depth A : 6
Depth B : 5
-- Taxonomic Distance --
* Carnotaurus vs Triceratops
Distance : 0.333333333333333
MRCA : Dinosauria (depth 3)
Depth A : 6
Depth B : 5
x Could not retrieve one or both lineages
-- Lineage Comparison --
MRCA: NA at depth 0
Drosophila only (5 nodes):
> Biota
> Animalia
> Arthropoda
> Insecta
> Drosophila
Saccharomyces only (3 nodes):
> Fungi
> Ascomycota
> Saccharomyces
-- Lineage Comparison --
MRCA: Dinosauria at depth 3
Shared lineage (3 nodes):
Biota
Animalia
Dinosauria
Dinosauria only (0 nodes):
Carnotaurus only (2 nodes):
> Theropoda
> Carnotaurus
i Searching Taxonomicon for Carnotaurus...
v Found Carnotaurus with ID 12345
i Searching Taxonomicon for Pterodactylus...
! Pterodactylus not found in Taxonomicon
Saving _problems/test-distance-547.R
i Searching Taxonomicon for Quercus...
! Quercus not found in Taxonomicon
[ FAIL 1 | WARN 0 | SKIP 26 | PASS 90 ]
══ Skipped tests (26) ══════════════════════════════════════════════════════════
• On CRAN (26): 'test-distance.R:604:3', 'test-distance.R:615:3',
'test-distance.R:624:3', 'test-distance.R:633:3', 'test-distance.R:641:3',
'test-distance.R:649:3', 'test-distance.R:655:3', 'test-distance.R:665:3',
'test-distance.R:672:3', 'test-distance.R:680:3', 'test-distance.R:688:3',
'test-distance.R:694:3', 'test-distance.R:700:3', 'test-distance.R:706:3',
'test-distance.R:714:3', 'test-distance.R:721:3', 'test-distance.R:727:3',
'test-distance.R:736:3', 'test-distance.R:746:3', 'test-distance.R:756:3',
'test-distance.R:764:3', 'test-distance.R:770:3', 'test-distance.R:782:3',
'test-distance.R:789:3', 'test-distance.R:795:3', 'test-distance.R:801:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-distance.R:547:3'): get_taxonomicon_id skips row matching both bio and astronomical keywords ──
Expected `result` to equal "42042".
Differences:
`actual` is NULL
`expected` is a character vector ('42042')
[ FAIL 1 | WARN 0 | SKIP 26 | PASS 90 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc