CytoSimplex: Simplex Visualization of Cell Fate Similarity in Single-Cell Data
Create simplex plots to visualize the similarity between single-cells and selected clusters in a 1-/2-/3-simplex space. Velocity information can be added as an additional layer. See Liu J, Wang Y et al (2023) <doi:10.1093/bioinformatics/btaf119> for more details.
| Version: | 0.2.0 |
| Depends: | stats, methods, grDevices, R (≥ 3.6) |
| Imports: | cli, ggplot2, Matrix, plot3D, plotly, RColorBrewer, Rcpp, rlang, viridis |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | hdf5r, knitr, magick, patchwork, rmarkdown, Seurat, SeuratObject, SingleCellExperiment, SummarizedExperiment, testthat (≥ 3.0.0) |
| Published: | 2025-04-23 |
| DOI: | 10.32614/CRAN.package.CytoSimplex |
| Author: | Yichen Wang  [aut,
cre],
Jialin Liu [aut],
Joshua Welch [cph] |
| Maintainer: | Yichen Wang <wayichen at umich.edu> |
| License: | GPL-3 |
| URL: | https://welch-lab.github.io/CytoSimplex/, https://github.com/welch-lab/CytoSimplex |
| NeedsCompilation: | yes |
| Materials: | README NEWS |
| CRAN checks: | CytoSimplex results |
Documentation:
| Reference manual: | CytoSimplex.pdf |
| Vignettes: |
Simplex Visualization of Cell Fate Similarity in Single-Cell Data (source, R code) |
Downloads:
| Package source: | CytoSimplex_0.2.0.tar.gz |
| Windows binaries: | r-devel: CytoSimplex_0.1.1.zip, r-release: CytoSimplex_0.2.0.zip, r-oldrel: CytoSimplex_0.2.0.zip |
| macOS binaries: | r-release (arm64): CytoSimplex_0.2.0.tgz, r-oldrel (arm64): CytoSimplex_0.2.0.tgz, r-release (x86_64): CytoSimplex_0.2.0.tgz, r-oldrel (x86_64): CytoSimplex_0.2.0.tgz |
| Old sources: | CytoSimplex archive |
Linking:
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