Tools to quantify transmissibility throughout
an epidemic from the analysis of time series of incidence as described in
Cori et al. (2013) <doi:10.1093/aje/kwt133> and Wallinga and Teunis (2004)
<doi:10.1093/aje/kwh255>.
| Version: |
2.2-4 |
| Depends: |
R (≥ 2.10) |
| Imports: |
coarseDataTools (≥ 0.6-4), stats, graphics, reshape2, ggplot2, gridExtra, fitdistrplus, coda, incidence (≥ 1.7.0), scales, grDevices |
| Suggests: |
testthat, utils, vdiffr, covr, knitr, rmarkdown |
| Published: |
2021-01-07 |
| DOI: |
10.32614/CRAN.package.EpiEstim |
| Author: |
Anne Cori  [aut,
cre] (<https://orcid.org/0000-0002-8443-9162>),
Simon Cauchemez [ctb],
Neil M. Ferguson
[ctb] (<https://orcid.org/0000-0002-1154-8093>),
Christophe Fraser
[ctb] (<https://orcid.org/0000-0003-2399-9657>),
Elisabeth Dahlqwist
[ctb]
(<https://orcid.org/0000-0001-5797-6803>),
P. Alex Demarsh [ctb],
Thibaut Jombart
[ctb] (<https://orcid.org/0000-0003-2226-8692>),
Zhian N. Kamvar
[ctb] (<https://orcid.org/0000-0003-1458-7108>),
Justin Lessler
[ctb] (<https://orcid.org/0000-0002-9741-8109>),
Shikun Li [ctb],
Jonathan A. Polonsky
[ctb]
(<https://orcid.org/0000-0002-8634-4255>),
Jake Stockwin [ctb],
Robin Thompson
[ctb] (<https://orcid.org/0000-0001-8545-5212>),
Rolina van Gaalen [ctb] |
| Maintainer: |
Anne Cori <a.cori at imperial.ac.uk> |
| BugReports: |
https://github.com/mrc-ide/EpiEstim/issues |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: |
https://github.com/mrc-ide/EpiEstim |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| In views: |
Epidemiology |
| CRAN checks: |
EpiEstim results |