LorMe

LorMe package for R：Lightening One-code Resolving Microbial Ecology Program. LorMe keeps updating and maintanence.

Suggestions and bug report

2434066068@qq.com

Installation

development version from GitHub :stuck_out_tongue_closed_eyes:

if (!require(remotes)) install.packages("remotes")
remotes::install_github("wangnq111/LorMe")

Illustration

Chinese version

Chinese illustration available at 🏮 LorMe中文版说明书 🏮 ## Visualization

Community Feature

Alpha diversity

Community Structure

Support three styles: ellipse (as in the below),stick and polygon

Community Composition

Support three styles: Bar plot (as in the below), Area plot and alluvial plot

Differential Analysis

Differential Bar

Volcano Plot

Support Fold change-FDR plot and Mean-Fold change plot

Manhatton Plot

Support both classical style and circular style

Network analysis

Classical network

Painted top five largest modules

Meta network

Painted differential taxon

Module composition pie chart