PopVar: Genomic Breeding Tools: Genetic Variance Prediction and
Cross-Validation
The main attribute of 'PopVar' is the prediction of genetic variance in bi-parental populations,
from which the package derives its name. 'PopVar' contains a set of functions that use phenotypic and genotypic
data from a set of candidate parents to 1) predict the mean, genetic variance, and superior progeny value of all,
or a defined set of pairwise bi-parental crosses, and 2) perform cross-validation to estimate genome-wide prediction
accuracy of multiple statistical models. More details are available in Mohammadi, Tiede, and Smith (2015, <doi:10.2135/cropsci2015.01.0030>).
A dataset 'think_barley.rda' is included for reference and examples.
| Version: |
1.3.2 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
BGLR, qtl, rrBLUP, stats, utils, methods, parallel |
| Suggests: |
knitr, rmarkdown |
| Published: |
2024-10-20 |
| DOI: |
10.32614/CRAN.package.PopVar |
| Author: |
Tyler Tiede [aut],
Jeffrey Neyhart 
[aut, ctb, cre] (<https://orcid.org/0000-0002-1991-5310>),
Mohsen Mohammadi
[ctb] (<https://orcid.org/0000-0002-4536-1200>),
Kevin Smith [ctb]
(<https://orcid.org/0000-0001-8253-3326>) |
| Maintainer: |
Jeffrey Neyhart <neyhartje at gmail.com> |
| BugReports: |
https://github.com/UMN-BarleyOatSilphium/PopVar/issues |
| License: |
GPL-3 |
| URL: |
https://github.com/UMN-BarleyOatSilphium/PopVar |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| In views: |
Agriculture |
| CRAN checks: |
PopVar results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=PopVar
to link to this page.