camtrapR: Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses

Management of and data extraction from camera trap data in wildlife studies. The package provides a workflow for storing and sorting camera trap photos (and videos), tabulates records of species and individuals, and creates detection/non-detection matrices for occupancy and spatial capture-recapture analyses with great flexibility. In addition, it can visualise species activity data and provides simple mapping functions with GIS export.

Version: 2.3.0
Depends: R (≥ 3.1.0)
Imports: data.table, generics, ggplot2, lubridate, methods, secr, sf
Suggests: abind, coda, DT, knitr, lattice, leaflet, magick, mapview, nimble, nimbleEcology, overlap, parallel, plotly, reshape2, rjags, R.rsp, RSQLite, ritis, rmarkdown, shiny, shinydashboard, tesseract, taxize, terra, testthat, tibble, units, unmarked, zip
Published: 2024-02-26
DOI: 10.32614/CRAN.package.camtrapR
Author: Juergen Niedballa ORCID iD [aut, cre] (<https://orcid.org/0000-0002-9187-2116>), Alexandre Courtiol ORCID iD [aut] (<https://orcid.org/0000-0003-0637-2959>), Rahel Sollmann ORCID iD [aut] (<https://orcid.org/0000-0002-1607-2039>), John Mathai [ctb], Seth Timothy Wong ORCID iD [ctb] (<https://orcid.org/0000-0001-8083-9268>), An The Truong Nguyen ORCID iD [ctb] (<https://orcid.org/0000-0003-0456-3866>), Azlan bin Mohamed ORCID iD [ctb] (<https://orcid.org/0000-0003-3788-4383>), Andrew Tilker ORCID iD [ctb] (<https://orcid.org/0000-0003-3630-8691>), Roshan Guharajan ORCID iD [ctb] (<https://orcid.org/0000-0001-8124-5461>), Ioannis Alexiou ORCID iD [ctb] (<https://orcid.org/0000-0001-5095-4767>), Andreas Wilting ORCID iD [ctb, ths] (<https://orcid.org/0000-0001-5073-9186>)
Maintainer: Juergen Niedballa <camtrapr at gmail.com>
BugReports: https://groups.google.com/forum/#!forum/camtrapr
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://github.com/jniedballa/camtrapR, https://jniedballa.github.io/camtrapR/, https://groups.google.com/forum/#!forum/camtrapr
NeedsCompilation: no
SystemRequirements: ExifTool (https://exiftool.org/)
Citation: camtrapR citation info
Materials: README NEWS
CRAN checks: camtrapR results

Documentation:

Reference manual: camtrapR.pdf
Vignettes: 1. Organising raw camera trap images in camtrapR
2. Species and Individual Identification
3. Data Extraction from Images and videos, creating occupancy & secr input
4. Data exploration and visualisation
5. Multi-species occupancy models

Downloads:

Package source: camtrapR_2.3.0.tar.gz
Windows binaries: r-devel: camtrapR_2.3.0.zip, r-release: camtrapR_2.3.0.zip, r-oldrel: camtrapR_2.3.0.zip
macOS binaries: r-release (arm64): camtrapR_2.3.0.tgz, r-oldrel (arm64): camtrapR_2.3.0.tgz, r-release (x86_64): camtrapR_2.3.0.tgz, r-oldrel (x86_64): camtrapR_2.3.0.tgz
Old sources: camtrapR archive

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