coffee 0.4.3

• further corrections regarding a bug in the Vignette.

coffee 0.4.2

• draw.strat now plots gaps better when using BCAD
• labels can be plotted in draw.strat (not done by default)
• strat runs now write a file ending in _ages.txt, containing the age estimates (95% ranges, means, medians, modes) into the site’s folder, and if gaps were modelled, another file ending in _gaps.txt with the same estimates for the gap sizes.
• new function MCMCrings to calculate both age estimates and age offsets for a C14-dated tree.
• corrected a bug in the Vignette.

coffee 0.4.1

• further separation of the ‘rice’ and ‘rintcal’ packages within ‘coffee’
• added a function ‘strat.cleanup()’ to remove previous runs

coffee 0.4.0

• now linking to both the ‘rice’ and ‘rintcal’ packages
• updated how gaps in strats are plotted

coffee 0.3.0

• updated the vignette
• added functions scissors and thinner for manipulation of MCMC output
• enhanced strat code so it runs around 40% faster
• previous strat runs can now be reloaded (using run=FALSE)
• files are now read and written to faster (using fread, fwrite)
• strat iterations can either be loaded into memory or written to files
• added fit measure (and also offset for rings)

coffee 0.2.0

• now links to the rintcal package (renamed from IntCal)
• the strat function now handles undated levels, blocks of dates, and different types of gaps (of exactly known length, or according to a normal or gamma distribution)

coffee 0.1.1

• added references to the methods to the DESCRIPTION file
• replaced all instances of cat() with message()
• the original par settings are now saved if the function is exited

coffee 0.1.0

• this is the first CRAN iteration of the coffee package