finalsize: Calculate the Final Size of an Epidemic

Calculate the final size of a susceptible-infectious-recovered epidemic in a population with demographic variation in contact patterns and susceptibility to disease, as discussed in Miller (2012) <doi:10.1007/s11538-012-9749-6>.

Version: 0.2.1
Depends: R (≥ 2.10)
Imports: checkmate, Rcpp
LinkingTo: Rcpp, RcppEigen
Suggests: bookdown, colorspace, dplyr, forcats, ggplot2, ggtext, knitr, purrr, rmarkdown, scales, socialmixr, spelling, testthat (≥ 3.0.0), tibble, tidyr, xml2
Published: 2024-04-09
DOI: 10.32614/CRAN.package.finalsize
Author: Pratik Gupte ORCID iD [aut, cre, cph] (<https://orcid.org/0000-0001-5294-7819>), Edwin Van Leeuwen ORCID iD [aut, cph] (<https://orcid.org/0000-0002-2383-5305>), Adam Kucharski ORCID iD [aut, cph] (<https://orcid.org/0000-0001-8814-9421>), Rosalind Eggo ORCID iD [ctb] (<https://orcid.org/0000-0002-0362-6717>), Hugo Gruson ORCID iD [ctb] (<https://orcid.org/0000-0002-4094-1476>), Thibaut Jombart ORCID iD [ctb] (<https://orcid.org/0000-0003-3796-2097>), Andree Valle-Campos ORCID iD [ctb] (<https://orcid.org/0000-0002-7779-481X>), Joshua W. Lambert ORCID iD [rev] (<https://orcid.org/0000-0001-5218-3046>)
Maintainer: Pratik Gupte <pratik.gupte at lshtm.ac.uk>
BugReports: https://github.com/epiverse-trace/finalsize/issues
License: MIT + file LICENSE
URL: https://github.com/epiverse-trace/finalsize, https://epiverse-trace.github.io/finalsize/
NeedsCompilation: yes
Language: en-GB
Materials: README NEWS
In views: Epidemiology
CRAN checks: finalsize results

Documentation:

Reference manual: finalsize.pdf
Vignettes: Comparison with a compartmental model
Projecting re-emergence risk after waning or new births
Calculating the final size of an epidemic
Guide to constructing susceptibility matrices
Theoretical background
Modelling uncertainty in R₀
Modelling heterogeneous social contacts
Modelling heterogeneous susceptibility

Downloads:

Package source: finalsize_0.2.1.tar.gz
Windows binaries: r-devel: finalsize_0.2.1.zip, r-release: finalsize_0.2.1.zip, r-oldrel: finalsize_0.2.1.zip
macOS binaries: r-release (arm64): finalsize_0.2.1.tgz, r-oldrel (arm64): finalsize_0.2.1.tgz, r-release (x86_64): finalsize_0.2.1.tgz, r-oldrel (x86_64): finalsize_0.2.1.tgz
Old sources: finalsize archive

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