htrSPRanalysis: Analysis of Surface Plasmon Resonance Data
Analysis of Surface Plasmon Resonance (SPR) and Biolayer Interferometry data, with automations for high-throughput SPR. This version of the package fits the 1: 1 binding model, with and without bulkshift. It offers optional local or global Rmax fitting. The user must provide a sample sheet and a Carterra output file in Carterra's current format. There is a utility function to convert from Carterra's old output format. The user may run a custom pipeline or use the provided 'Runscript', which will produce a pdf file containing fitted Rmax, ka, kd and standard errors, a plot of the sensorgram and fits, and a plot of residuals. The script will also produce a .csv file with all of the relevant parameters for each spot on the SPR chip.
| Version: |
0.1.0 |
| Imports: |
magrittr, readxl, openxlsx, minpack.lm, zoo, stats, gridExtra, grid, parallel, readr, rlang, dplyr, stringr, tidyselect, ggplot2, purrr, forcats, tibble, tidyr |
| Suggests: |
knitr, rmarkdown, markdown, qpdf |
| Published: |
2024-08-26 |
| DOI: |
10.32614/CRAN.package.htrSPRanalysis |
| Author: |
Janice McCarthy Developer [aut, cre, cph],
Kan Li Dev [aut],
S. Moses Dennison [aut],
Georgia D. Tomaras [aut] |
| Maintainer: |
Janice McCarthy Developer <janice.mccarthy at duke.edu> |
| License: |
GPL (≥ 3) |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
htrSPRanalysis results |
Documentation:
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