The vaccination efficacy has been modified to reflect a probability (the original intent) instead of a rate. Previous versions were resulting in a higher than expected vaccinated individuals becoming infected (update from epiworldR 0.13.0.0).
Improved documentation regarding vaccination rates and probabilities across models.
epiworld
(0.14.0), which introduced several important changes. You can read more
about the changes here (the
corresponding epiworldR PR is here.).Removed the configure script infrastructure
(configure.ac, configure,
cleanup, src/Makevars.in) in favor of a static
src/Makevars that uses R’s own
$(SHLIB_OPENMP_CXXFLAGS) for OpenMP support. This addresses
CRAN policy compliance by removing unnecessary C++11 compiler testing
and custom OpenMP detection.
Added CXX_STD = CXX17 to src/Makevars
and src/Makevars.win, and
SystemRequirements: C++17 to DESCRIPTION, as
required by the epiworld C++ headers (std::string_view,
if constexpr).
This is the first release of the measles R package, a spin-off of the epiworldR package, focused on modeling measles transmission dynamics.
get_contact_matrix() and
set_contact_matrix() functions to retrieve and modify the
contact matrix for mixing models. These functions are available for:
ModelMeaslesMixingModelMeaslesMixingRiskQuarantine