neuroimaGene: Transcriptomic Atlas of Neuroimaging Derived Phenotypes
Contains functions to query and visualize the Neuroimaging features associated with genetically regulated gene expression (GReX). The primary utility, neuroimaGene(), relies on a list of user-defined genes and returns a table of neuroimaging features (NIDPs) associated with each gene. This resource is designed to assist in the interpretation of genome-wide and transcriptome-wide association studies that evaluate brain related traits. Bledsoe (2024) <doi:10.1016/j.ajhg.2024.06.002>. In addition there are several visualization functions that generate summary plots and 2-dimensional visualizations of regional brain measures. Mowinckel (2020).
| Version: | 0.1.2 |
| Depends: | R (≥ 3.5.0) |
| Imports: | data.table, ggplot2, DBI, stringr, ggseg, RSQLite |
| Suggests: | knitr, rmarkdown |
| Published: | 2024-12-09 |
| DOI: | 10.32614/CRAN.package.neuroimaGene |
| Author: | Xavier Bledsoe 
[aut, cre] (<https://orcid.org/0000-0002-6091-9372>),
Eric Gamazon
[aut] (<https://orcid.org/0000-0003-4204-8734>) |
| Maintainer: | Xavier Bledsoe <xavier.bledsoe at vanderbilt.edu> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | no |
| Citation: | neuroimaGene citation info |
| Materials: | README |
| CRAN checks: | neuroimaGene results |
Documentation:
| Reference manual: | neuroimaGene.pdf |
| Vignettes: |
neuroimaGene (source, R code) |
Downloads:
| Package source: | neuroimaGene_0.1.2.tar.gz |
| Windows binaries: | r-devel: neuroimaGene_0.1.2.zip, r-release: neuroimaGene_0.1.2.zip, r-oldrel: neuroimaGene_0.1.2.zip |
| macOS binaries: | r-release (arm64): neuroimaGene_0.1.2.tgz, r-oldrel (arm64): neuroimaGene_0.1.2.tgz, r-release (x86_64): neuroimaGene_0.1.2.tgz, r-oldrel (x86_64): neuroimaGene_0.1.2.tgz |
| Old sources: | neuroimaGene archive |
Linking:
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