pomp: Statistical Inference for Partially Observed Markov Processes

Tools for data analysis with partially observed Markov process (POMP) models (also known as stochastic dynamical systems, hidden Markov models, and nonlinear, non-Gaussian, state-space models). The package provides facilities for implementing POMP models, simulating them, and fitting them to time series data by a variety of frequentist and Bayesian methods. It is also a versatile platform for implementation of inference methods for general POMP models.

Version: 6.1
Depends: R (≥ 4.1.0)
Imports: methods, stats, graphics, digest, mvtnorm, deSolve, coda, data.table
Suggests: ggplot2, knitr, dplyr, tidyr, subplex, nloptr
Published: 2025-01-08
DOI: 10.32614/CRAN.package.pomp
Author: Aaron A. King ORCID iD [aut, cre] (<https://orcid.org/0000-0001-6159-3207>), Edward L. Ionides ORCID iD [aut] (<https://orcid.org/0000-0002-4190-0174>), Carles Bretó ORCID iD [aut] (<https://orcid.org/0000-0003-4695-4902>), Stephen P. Ellner ORCID iD [ctb] (<https://orcid.org/0000-0002-8351-9734>), Matthew J. Ferrari ORCID iD [ctb] (<https://orcid.org/0000-0001-5251-8168>), Sebastian Funk ORCID iD [ctb] (<https://orcid.org/0000-0002-2842-3406>), Steven G. Johnson [ctb], Bruce E. Kendall ORCID iD [ctb] (<https://orcid.org/0000-0003-1782-8106>), Michael Lavine [ctb], Dao Nguyen ORCID iD [ctb] (<https://orcid.org/0000-0003-2215-613X>), Eamon B. O'Dea ORCID iD [ctb] (<https://orcid.org/0000-0003-4748-683X>), Daniel C. Reuman [ctb], Helen Wearing ORCID iD [ctb] (<https://orcid.org/0000-0002-9837-9797>), Simon N. Wood ORCID iD [ctb] (<https://orcid.org/0000-0002-2034-7453>)
Maintainer: Aaron A. King <kingaa at umich.edu>
BugReports: https://github.com/kingaa/pomp/issues/
License: GPL-3
URL: https://kingaa.github.io/pomp/
NeedsCompilation: yes
SystemRequirements: For Windows users, Rtools (see https://cran.r-project.org/bin/windows/Rtools/).
Citation: pomp citation info
Materials: README NEWS
In views: DifferentialEquations, Epidemiology, TimeSeries
CRAN checks: pomp results

Documentation:

Reference manual: pomp.pdf

Downloads:

Package source: pomp_6.1.tar.gz
Windows binaries: r-devel: pomp_6.1.zip, r-release: pomp_6.1.zip, r-oldrel: pomp_6.1.zip
macOS binaries: r-release (arm64): pomp_6.1.tgz, r-oldrel (arm64): pomp_6.1.tgz, r-release (x86_64): pomp_6.1.tgz, r-oldrel (x86_64): pomp_6.1.tgz
Old sources: pomp archive

Reverse dependencies:

Reverse depends: panelPomp, spatPomp
Reverse imports: DTAT, stops
Reverse linking to: spatPomp
Reverse suggests: CollocInfer, epimdr, epimdr2, spaero

Linking:

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