Implementation of the scregclust algorithm
described in Larsson, Held, et al. (2024) <doi:10.1038/s41467-024-53954-3>
which reconstructs regulatory programs of target genes in scRNA-seq data.
Target genes are clustered into modules and each module is associated with a linear
model describing the regulatory program.
| Version: |
0.2.0 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
Matrix, stats, methods, utils, reshape, igraph, graphics, grid, cli, prettyunits, ggplot2, rlang, Rcpp (≥ 1.0.8) |
| LinkingTo: |
Rcpp, RcppEigen |
| Suggests: |
knitr, rmarkdown, testthat (≥ 3.0.0), Seurat (≥ 5.0.0), glmGamPoi, hdf5r |
| Published: |
2024-12-06 |
| DOI: |
10.32614/CRAN.package.scregclust |
| Author: |
Felix Held  [aut,
cre] (<https://orcid.org/0000-0002-7679-7752>),
Ida Larsson [aut]
(<https://orcid.org/0000-0001-5422-4243>),
Sven Nelander
[aut] (<https://orcid.org/0000-0003-1758-1262>),
André Armatowski [ctb] |
| Maintainer: |
Felix Held <felix.held at gmail.com> |
| BugReports: |
https://github.com/scmethods/scregclust/issues |
| License: |
GPL (≥ 3) |
| URL: |
https://scmethods.github.io/scregclust/,
https://github.com/scmethods/scregclust/ |
| NeedsCompilation: |
yes |
| Citation: |
scregclust citation info |
| Materials: |
README NEWS |
| CRAN checks: |
scregclust results |