tidysq: Tidy Processing and Analysis of Biological Sequences
A tidy approach to analysis of biological sequences. All processing and data-storage functions are heavily optimized to allow the fastest and most efficient data storage.
| Version: | 1.2.2 |
| Depends: | R (≥ 3.0.0) |
| Imports: | checkmate (≥ 1.9.0), cli (≥ 2.0.0), crayon (≥ 1.3.4), dplyr (≥ 1.0.2), pillar (≥ 1.4.2), Rcpp (≥ 1.0.1), tibble (≥ 2.1.3), vctrs (≥ 0.3.0) |
| LinkingTo: | Rcpp, testthat |
| Suggests: | ape (≥ 5.3), bioseq (≥ 0.1.2), Biostrings (≥ 2.52.0), covr, knitr, lifecycle, purrr, seqinr (≥ 3.4-5), spelling, rmarkdown, testthat (≥ 3.0.0), withr (≥ 2.2.0), rlang, mockr |
| Published: | 2024-10-24 |
| DOI: | 10.32614/CRAN.package.tidysq |
| Author: | Dominik Rafacz 
[cre, aut],
Michal Burdukiewicz
[aut],
Laura Bakala [aut],
Leon Eyrich Jessen
[ctb],
Stefan Roediger
[ctb],
Jadwiga Slowik
[ctb],
Weronika Puchala
[ctb],
Katarzyna Sidorczuk [ctb],
Filip Pietluch [ctb],
Jaroslaw Chilimoniuk
[ctb] |
| Maintainer: | Dominik Rafacz <dominikrafacz at gmail.com> |
| BugReports: | https://github.com/BioGenies/tidysq/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/BioGenies/tidysq |
| NeedsCompilation: | yes |
| SystemRequirements: | GNU make, C++17 |
| Language: | en-US |
| Materials: | README NEWS |
| CRAN checks: | tidysq results [issues need fixing before 2025-01-10] |
Documentation:
| Reference manual: | tidysq.pdf |
| Vignettes: |
Advanced alphabet techniques (source, R code) Quick Start (source, R code) |
Downloads:
| Package source: | tidysq_1.2.2.tar.gz |
| Windows binaries: | r-devel: tidysq_1.2.2.zip, r-release: tidysq_1.2.2.zip, r-oldrel: tidysq_1.2.2.zip |
| macOS binaries: | r-release (arm64): tidysq_1.2.2.tgz, r-oldrel (arm64): tidysq_1.2.2.tgz, r-release (x86_64): tidysq_1.2.2.tgz, r-oldrel (x86_64): tidysq_1.2.2.tgz |
| Old sources: | tidysq archive |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=tidysq to link to this page.