Last updated on 2024-12-22 10:50:36 CET.
| Package | WARN | NOTE | OK |
|---|---|---|---|
| adegenet | 5 | 8 | |
| apyramid | 13 | ||
| aweek | 13 | ||
| epikit | 8 | 5 | |
| ezec | 13 | ||
| matchmaker | 8 | 5 | |
| poppr | 1 | 3 | 9 |
| tinkr | 10 | 3 |
Current CRAN status: NOTE: 5, OK: 8
Version: 2.1.10
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
df2genind.Rd: hierarchy
pairDist.Rd: dist.dna
strata-methods.Rd: hierarchy
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 2.1.10
Check: installed package size
Result: NOTE
installed size is 5.8Mb
sub-directories of 1Mb or more:
R 2.0Mb
data 1.3Mb
files 1.7Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.1.10
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'adespatial', 'hierfstat', 'spdep', 'poppr'
Flavor: r-oldrel-macos-x86_64
Version: 2.1.10
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘spdep’
Flavor: r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 8, OK: 5
Version: 0.1.6
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘epidict’
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 8, OK: 5
Version: 0.1.1
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: WARN: 1, NOTE: 3, OK: 9
Version: 2.9.6
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
MLG-accessors.Rd: genlight-class
aboot.Rd: genind, genpop, genlight-class
bitwise.dist.Rd: genlight-class, genind-class
bitwise.ia.Rd: genlight-class
bootgen-class.Rd: gen-class
bruvo.boot.Rd: genind, boot.phylo, nancycats, nj, nodelabels, tab
bruvo.dist.Rd: genind
bruvo.msn.Rd: genind, nancycats
bruvomat-methods.Rd: genind-class
clonecorrect.Rd: genind-class
coercion-methods.Rd: genind-class, splitStrata
diss.dist.Rd: genind
diversity_ci.Rd: genind
filter_stats.Rd: genind, genlight
fix_replen.Rd: genind
genclone-class.Rd: genind-class, genlight-class
genclone-method.Rd: genind-class
genetic_distance.Rd: genind-class, dist.genpop
genind2genalex.Rd: genind-class
genotype_curve.Rd: genind-class
ia.Rd: import2genind
info_table.Rd: genind-class
informloci.Rd: genind-class
is.clone.Rd: genind-class, genlight-class
missingno.Rd: genind-class, tab
mlg.Rd: ggplot
mlg.filter.Rd: genind-class
pgen.Rd: strata
plot_poppr_msn.Rd: genind-class, genlight-class
poppr-package.Rd: genind-class, genlight-class
poppr.Rd: tab, strata, last_plot
poppr.amova.Rd: genind-class, genlight-class, strata, quasieuclid,
lingoes, cailliez
poppr.msn.Rd: genind, genlight, nancycats, nj, nodelabels, tab
popsub.Rd: genind-class, genlight-class
psex.Rd: strata
read.genalex.Rd: genind, other, genind-class
recode_polyploids.Rd: genind-class, genpop-class
rraf.Rd: strata
shufflepop.Rd: genind-class
snpclone-coercion-methods.Rd: genlight-class
snpclone-method.Rd: genlight-class
test_replen.Rd: genind
upgma.Rd: as.phylo
win.ia.Rd: genlight-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 2.9.6
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘algo.Rnw’ using knitr
Error: processing vignette 'algo.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'algo.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.548 \hlkwd{library}\hldef
{(}\hlsng{"poppr"}\hldef{)}
?
! Emergency stop.
! Emergency stop.
l.548
End of file on the terminal!
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘algo.Rnw’
SUMMARY: processing the following file failed:
‘algo.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
Current CRAN status: NOTE: 10, OK: 3
Version: 0.2.0
Check: Rd files
Result: NOTE
checkRd: (-1) add_md.Rd:10: Lost braces; missing escapes or markup?
10 | \item{body}{an XML object generated via {tinkr}}
| ^
checkRd: (-1) md_ns.Rd:13: Lost braces; missing escapes or markup?
13 | The {commonmark} package is used to translate markdown to XML, but it does
| ^
checkRd: (-1) md_ns.Rd:14: Lost braces; missing escapes or markup?
14 | not assign a namespace prefix, which means that {xml2} will auto-assign a
| ^
checkRd: (-1) stylesheet.Rd:5: Lost braces; missing escapes or markup?
5 | \title{The {tinkr} stylesheet}
| ^
checkRd: (-1) stylesheet.Rd:14: Lost braces; missing escapes or markup?
14 | This function returns the path to the {tinkr} stylesheet
| ^
checkRd: (-1) stylesheet.Rd:11: Lost braces; missing escapes or markup?
11 | stylesheet used by {tinkr}.
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64