acoRn: Exclusion-Based Parentage Assignment Using Multilocus Genotype
Data
Exclusion-based parentage assignment is essential for studies in biodiversity conservation and breeding programs - Kang Huang, Rui Mi, Derek W Dunn, Tongcheng Wang, Baoguo Li, (2018), <doi:10.1534/genetics.118.301592>. The tool compares multilocus genotype data of potential parents and offspring, identifying likely parentage relationships while accounting for genotyping errors, missing data, and duplicate genotypes. 'acoRn' includes two algorithms: one generates synthetic genotype data based on user-defined parameters, while the other analyzes existing genotype data to identify parentage patterns. The package is versatile, applicable to diverse organisms, and offers clear visual outputs, making it a valuable resource for researchers.
| Version: |
0.1.0 |
| Depends: |
R (≥ 2.10) |
| Imports: |
data.table, stringr, stringi |
| Suggests: |
testthat (≥ 3.0.0) |
| Published: |
2024-10-02 |
| DOI: |
10.32614/CRAN.package.acoRn |
| Author: |
Nikos Pechlivanis 
[aut, cre] (<https://orcid.org/0000-0003-2502-612X>),
Fotis Psomopoulos
[aut] (<https://orcid.org/0000-0002-0222-4273>),
Aristotelis Papageorgiou
[aut]
(<https://orcid.org/0000-0001-6657-7820>) |
| Maintainer: |
Nikos Pechlivanis <npechlv at gmail.com> |
| License: |
MIT + file LICENSE |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
acoRn results |
Documentation:
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