'Align-GVGD' ('A-GVGD') is a method to predict the impact of 'missense' substitutions based on the properties of amino acid side chains and protein multiple sequence alignments <doi:10.1136/jmg.2005.033878>. 'A-GVGD' is an extension of the original 'Grantham' distance to multiple sequence alignments. This package provides an alternative R implementation to the web version found on <http://agvgd.hci.utah.edu/>.
Version: | 0.1.2 |
Depends: | R (≥ 2.10) |
Imports: | crayon, dplyr, glue, grantham, magrittr, purrr, rlang, seqinr, stringr, tibble, tidyr, vctrs |
Suggests: | rmarkdown, covr, testthat (≥ 3.0.0) |
Published: | 2022-09-10 |
DOI: | 10.32614/CRAN.package.agvgd |
Author: | Ramiro Magno [aut, cre], Isabel Duarte [aut], Ana-Teresa Maia [aut], CINTESIS [cph, fnd] |
Maintainer: | Ramiro Magno <ramiro.magno at gmail.com> |
BugReports: | https://github.com/maialab/agvgd/issues |
License: | MIT + file LICENSE |
URL: | https://maialab.org/agvgd/, https://github.com/maialab/agvgd |
NeedsCompilation: | no |
Materials: | README NEWS |
In views: | Omics |
CRAN checks: | agvgd results |
Reference manual: | agvgd.pdf |
Package source: | agvgd_0.1.2.tar.gz |
Windows binaries: | r-devel: agvgd_0.1.2.zip, r-release: agvgd_0.1.2.zip, r-oldrel: agvgd_0.1.2.zip |
macOS binaries: | r-release (arm64): agvgd_0.1.2.tgz, r-oldrel (arm64): agvgd_0.1.2.tgz, r-release (x86_64): agvgd_0.1.2.tgz, r-oldrel (x86_64): agvgd_0.1.2.tgz |
Old sources: | agvgd archive |
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