Implements functions for working with absorbing Markov chains. The
implementation is based on the framework described in "Toward a unified
framework for connectivity that disentangles movement and mortality in space
and time" by Fletcher et al. (2019) <doi:10.1111/ele.13333>, which applies
them to spatial ecology. This framework incorporates both resistance and
absorption with spatial absorbing Markov chains (SAMC) to provide several
short-term and long-term predictions for metrics related to connectivity in
landscapes. Despite the ecological context of the framework, this package
can be used in any application of absorbing Markov chains.
| Version: |
4.0.0 |
| Depends: |
R (≥ 3.6.0) |
| Imports: |
methods, Matrix (≥ 1.5-3), raster, terra (≥ 1.7-3), circular |
| LinkingTo: |
Rcpp (≥ 1.0.10), RcppEigen (≥ 0.3.3.9.3), RcppThread (≥
2.1.3) |
| Suggests: |
knitr, rmarkdown, testthat, gdistance, viridisLite |
| Published: |
2024-10-30 |
| DOI: |
10.32614/CRAN.package.samc |
| Author: |
Andrew Marx  [aut,
cre, cph] (<https://orcid.org/0000-0002-7456-1631>),
Robert Fletcher
[ctb] (<https://orcid.org/0000-0003-1717-5707>),
Miguel Acevedo
[ctb] (<https://orcid.org/0000-0002-8289-1497>),
Jorge Sefair
[ctb] (<https://orcid.org/0000-0002-5887-8938>),
Chao Wang [ctb]
(<https://orcid.org/0000-0003-2706-5122>),
Hughes Josie
[ctb] (<https://orcid.org/0000-0001-7875-9015>),
Barrett Griffin [ctb] |
| Maintainer: |
Andrew Marx <ajm.rpackages at gmail.com> |
| BugReports: |
https://github.com/andrewmarx/samc/issues/ |
| License: |
AGPL (≥ 3) |
| URL: |
https://andrewmarx.github.io/samc/ |
| NeedsCompilation: |
yes |
| Citation: |
samc citation info |
| Materials: |
NEWS |
| CRAN checks: |
samc results |