statgenGWAS: Genome Wide Association Studies

Fast single trait Genome Wide Association Studies (GWAS) following the method described in Kang et al. (2010), <doi:10.1038/ng.548>. One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris.

Version: 1.0.10
Depends: R (≥ 3.6)
Imports: data.table, ggplot2 (≥ 3.0.0), methods, rlang, Rcpp, sommer (≥ 3.7.3)
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown, officer, tinytest, snpStats
Published: 2024-11-15
DOI: 10.32614/CRAN.package.statgenGWAS
Author: Bart-Jan van Rossum ORCID iD [aut, cre] (<https://orcid.org/0000-0002-8673-2514>), Willem Kruijer ORCID iD [aut] (<https://orcid.org/0000-0001-7179-1733>), Fred van Eeuwijk ORCID iD [ctb] (<https://orcid.org/0000-0003-3672-2921>), Martin Boer ORCID iD [ctb] (<https://orcid.org/0000-0002-1879-4588>), Marcos Malosetti ORCID iD [ctb] (<https://orcid.org/0000-0002-8150-1397>), Daniela Bustos-Korts ORCID iD [ctb] (<https://orcid.org/0000-0003-3827-6726>), Emilie Millet ORCID iD [ctb] (<https://orcid.org/0000-0002-2913-4892>), Joao Paulo ORCID iD [ctb] (<https://orcid.org/0000-0002-4180-0763>), Maikel Verouden ORCID iD [ctb] (<https://orcid.org/0000-0002-4893-3323>), Ron Wehrens ORCID iD [ctb] (<https://orcid.org/0000-0002-8798-5599>), Choazhi Zheng ORCID iD [ctb] (<https://orcid.org/0000-0001-6030-3933>)
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum at wur.nl>
BugReports: https://github.com/Biometris/statgenGWAS/issues
License: GPL-3
URL: https://biometris.github.io/statgenGWAS/index.html, https://github.com/Biometris/statgenGWAS/
NeedsCompilation: yes
Materials: README NEWS
In views: Agriculture
CRAN checks: statgenGWAS results

Documentation:

Reference manual: statgenGWAS.pdf
Vignettes: Introduction to the statgenGWAS package (source, R code)

Downloads:

Package source: statgenGWAS_1.0.10.tar.gz
Windows binaries: r-devel: statgenGWAS_1.0.10.zip, r-release: statgenGWAS_1.0.10.zip, r-oldrel: statgenGWAS_1.0.10.zip
macOS binaries: r-release (arm64): statgenGWAS_1.0.10.tgz, r-oldrel (arm64): statgenGWAS_1.0.10.tgz, r-release (x86_64): statgenGWAS_1.0.10.tgz, r-oldrel (x86_64): statgenGWAS_1.0.10.tgz
Old sources: statgenGWAS archive

Reverse dependencies:

Reverse depends: statgenMPP
Reverse imports: statgenIBD, statgenQTLxT

Linking:

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